Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C23
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82277-1|CAB05248.1|  648|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U12921-1|AAB60256.1|  648|Caenorhabditis elegans sex determinati...    28   5.5  
Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>Z82277-1|CAB05248.1|  648|Caenorhabditis elegans Hypothetical
           protein LLC1.1 protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +1

Query: 178 NTVGGGLEYMFKDKIGASASAAHTDFFNKNDYNLGGKLNLFKTPSTSLD 324
           N VGG L    +D  G  A   H   F K+D N   +L LF    T+ D
Sbjct: 176 NLVGGHLSDALQDVSGGVAETLHVRKFLKDDPN-DTELKLFNDLKTAFD 223


>U12921-1|AAB60256.1|  648|Caenorhabditis elegans sex determination
           protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +1

Query: 178 NTVGGGLEYMFKDKIGASASAAHTDFFNKNDYNLGGKLNLFKTPSTSLD 324
           N VGG L    +D  G  A   H   F K+D N   +L LF    T+ D
Sbjct: 176 NLVGGHLSDALQDVSGGVAETLHVRKFLKDDPN-DTELKLFNDLKTAFD 223


>Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical
           protein F38C2.5 protein.
          Length = 186

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 151 PTISHLPSTNTVGGGLEYMFKDKIGASASAAHTDF 255
           P +    S      GL   F D  GASAS++ TDF
Sbjct: 151 PLMPQFSSWFAPSSGLSREFLDNFGASASSSSTDF 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,933,390
Number of Sequences: 27780
Number of extensions: 267349
Number of successful extensions: 607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)