Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_C20
(642 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB090816-1|BAC57907.1| 455|Anopheles gambiae gag-like protein p... 56 1e-09
AB090823-1|BAC57921.1| 429|Anopheles gambiae gag-like protein p... 55 2e-09
M93691-1|AAA29366.1| 574|Anopheles gambiae protein ( Anopheles ... 54 4e-09
AB090813-1|BAC57901.1| 724|Anopheles gambiae gag-like protein p... 53 7e-09
AB090812-1|BAC57899.1| 541|Anopheles gambiae gag-like protein p... 52 2e-08
AB090817-1|BAC57909.1| 344|Anopheles gambiae gag-like protein p... 46 1e-06
AB090824-1|BAC57923.1| 298|Anopheles gambiae gag-like protein p... 43 7e-06
M93690-1|AAA29364.1| 613|Anopheles gambiae ORF1 protein. 43 9e-06
AB090822-1|BAC57919.1| 468|Anopheles gambiae gag-like protein p... 42 1e-05
AB090819-1|BAC57913.1| 400|Anopheles gambiae gag-like protein p... 42 2e-05
AF387862-1|AAL56547.1| 476|Anopheles gambiae gag polyprotein pr... 38 3e-04
AB090820-1|BAC57915.1| 527|Anopheles gambiae gag-like protein p... 38 3e-04
AB090821-1|BAC57917.1| 353|Anopheles gambiae gag-like protein p... 38 4e-04
AB090814-1|BAC57903.1| 499|Anopheles gambiae gag-like protein p... 37 6e-04
AB090815-1|BAC57905.1| 492|Anopheles gambiae gag-like protein p... 36 8e-04
AB090818-1|BAC57911.1| 285|Anopheles gambiae gag-like protein p... 33 0.006
AF295693-1|AAL55241.1| 786|Anopheles gambiae polyprotein protein. 32 0.013
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos... 30 0.054
DQ370037-1|ABD18598.1| 121|Anopheles gambiae putative TIL domai... 29 0.17
AJ292755-1|CAC00630.1| 837|Anopheles gambiae integrin beta subu... 24 3.6
EF990672-1|ABS30733.1| 466|Anopheles gambiae voltage-gated calc... 23 6.2
AY805323-1|AAV66543.1| 459|Anopheles gambiae beta subunit-GABA-... 23 6.2
>AB090816-1|BAC57907.1| 455|Anopheles gambiae gag-like protein
protein.
Length = 455
Score = 55.6 bits (128), Expect = 1e-09
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +3
Query: 180 REKCFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIA 347
R++C++C GH ARDC+ DR C RC GH A+ C +C ++ GHI+
Sbjct: 387 RQRCYRCLERGHLARDCQSPVDRQQACIRCGADGHYAKSCTSEIKCAACNGPHRIGHIS 445
Score = 49.6 bits (113), Expect = 8e-08
Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Frame = +3
Query: 231 KEEADRCYR-CNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNK 407
K+ A R R C I S D CY C + GH+AR+C + Q C C
Sbjct: 361 KQLAGRKLRLCGCISSIMEAMPVSVDRQRCYRCLERGHLARDCQ--SPVDRQQACIRCGA 418
Query: 408 SGHISRNCPDGTKTCYVCGKP---GHIS 482
GH +++C K C C P GHIS
Sbjct: 419 DGHYAKSCTSEIK-CAACNGPHRIGHIS 445
Score = 46.8 bits (106), Expect = 6e-07
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 272
CY+C GH AR+C + +RQ + C +C GH+A+ C E +C CNG
Sbjct: 390 CYRCLERGHLARDC--------QSPVDRQ-QACIRCGADGHYAKSCTSEI-KCAACNGPH 439
Query: 273 HIAR-ECAQ 296
I CA+
Sbjct: 440 RIGHISCAR 448
Score = 41.5 bits (93), Expect = 2e-05
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 384 QTCYNCNKSGHISRNCP---DGTKTCYVCGKPGHISRDCDEE 500
Q CY C + GH++R+C D + C CG GH ++ C E
Sbjct: 388 QRCYRCLERGHLARDCQSPVDRQQACIRCGADGHYAKSCTSE 429
>AB090823-1|BAC57921.1| 429|Anopheles gambiae gag-like protein
protein.
Length = 429
Score = 54.8 bits (126), Expect = 2e-09
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +3
Query: 171 NRQREKCFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECAQSPDEPSCYNCNKTGH 341
N Q+++C++C GH AR+C+ DR C RC GH+A++C C ++ GH
Sbjct: 358 NLQQQRCYRCLERGHIARECRSPVDRQKACIRCGAEGHLAKDCNAEVKCAVCSGPHRVGH 417
Score = 48.8 bits (111), Expect = 1e-07
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 237 EADRCYRCNGTGHIARECAQSPD-EPSCYNCNKTGHIARNC 356
+ RCYRC GHIAREC D + +C C GH+A++C
Sbjct: 360 QQQRCYRCLERGHIARECRSPVDRQKACIRCGAEGHLAKDC 400
Score = 47.2 bits (107), Expect = 4e-07
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +3
Query: 384 QTCYNCNKSGHISRNCP---DGTKTCYVCGKPGHISRDCDEE 500
Q CY C + GHI+R C D K C CG GH+++DC+ E
Sbjct: 362 QRCYRCLERGHIARECRSPVDRQKACIRCGAEGHLAKDCNAE 403
Score = 45.2 bits (102), Expect = 2e-06
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 272
CY+C GH AREC + +RQ+ C +C GH A+DC E +C C+G
Sbjct: 364 CYRCLERGHIARECR--------SPVDRQK-ACIRCGAEGHLAKDCNAEV-KCAVCSGPH 413
Query: 273 HIAR-ECAQ 296
+ +C +
Sbjct: 414 RVGHSDCVR 422
Score = 45.2 bits (102), Expect = 2e-06
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 315 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISR-DC 491
CY C + GHIAR C + + C C GH++++C K C VC P + DC
Sbjct: 364 CYRCLERGHIAREC--RSPVDRQKACIRCGAEGHLAKDCNAEVK-CAVCSGPHRVGHSDC 420
>M93691-1|AAA29366.1| 574|Anopheles gambiae protein ( Anopheles
gambiae RT2 retroposon. ).
Length = 574
Score = 54.0 bits (124), Expect = 4e-09
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +3
Query: 177 QREKCFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIA 347
+R++CF+C GH A +C+ ADR C RC TGH AR C +E C C HI
Sbjct: 504 ERQRCFRCLEMGHIASNCRSTADRQNLCIRCGLTGHKARSC---QNEAKCALCGGAHHIG 560
Query: 348 RN 353
+
Sbjct: 561 HS 562
Score = 50.4 bits (115), Expect = 5e-08
Identities = 25/81 (30%), Positives = 37/81 (45%)
Frame = +3
Query: 237 EADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGH 416
E + + C+ + P+ C+ C + GHIA NC D N C C +GH
Sbjct: 482 EGLKLFLCDCVSKVRAAPPTPPERQRCFRCLEMGHIASNC-RSTADRQN-LCIRCGLTGH 539
Query: 417 ISRNCPDGTKTCYVCGKPGHI 479
+R+C + K C +CG HI
Sbjct: 540 KARSCQNEAK-CALCGGAHHI 559
Score = 48.4 bits (110), Expect = 2e-07
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 272
C++C GH A C +RQ C +C TGH AR C+ EA +C C G
Sbjct: 508 CFRCLEMGHIASNCRSTA--------DRQ-NLCIRCGLTGHKARSCQNEA-KCALCGGAH 557
Query: 273 HIAR-ECAQS 299
HI ECA+S
Sbjct: 558 HIGHSECARS 567
Score = 39.9 bits (89), Expect = 7e-05
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +3
Query: 384 QTCYNCNKSGHISRNC---PDGTKTCYVCGKPGHISRDCDEE 500
Q C+ C + GHI+ NC D C CG GH +R C E
Sbjct: 506 QRCFRCLEMGHIASNCRSTADRQNLCIRCGLTGHKARSCQNE 547
Score = 28.7 bits (61), Expect = 0.17
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Frame = +3
Query: 87 SVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFAR-DCKEEADRCYR 257
++C +C TGH AR C + KC C H +C A RC R
Sbjct: 529 NLCIRCGLTGHKARSC-------------QNEAKCALCGGAHHIGHSECARSAQRCSR 573
>AB090813-1|BAC57901.1| 724|Anopheles gambiae gag-like protein
protein.
Length = 724
Score = 53.2 bits (122), Expect = 7e-09
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +3
Query: 174 RQREKCFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECAQSPDEPSCYNCNKTGH 341
R+R +C++C GH+A DC+ DR C RC GH+A+ C P C + GH
Sbjct: 657 RERVRCYRCLELGHWAHDCRSPDDRQNMCIRCGVVGHMAKVCTSQPKCLKCGGPHTIGH 715
Score = 41.1 bits (92), Expect = 3e-05
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 315 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISR-DC 491
CY C + GH A +C D+ C C GH+++ C K C CG P I DC
Sbjct: 662 CYRCLELGHWAHDC--RSPDDRQNMCIRCGVVGHMAKVCTSQPK-CLKCGGPHTIGHPDC 718
Score = 40.3 bits (90), Expect = 5e-05
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 272
CY+C GH+A +C + ++ C +C GH A+ C + +C +C G
Sbjct: 662 CYRCLELGHWAHDCRSP---------DDRQNMCIRCGVVGHMAKVCTSQ-PKCLKCGGPH 711
Query: 273 HIAR-ECAQS 299
I +CA+S
Sbjct: 712 TIGHPDCARS 721
Score = 33.1 bits (72), Expect = 0.008
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 390 CYNCNKSGHISRNC--PDGTKT-CYVCGKPGHISRDCDEE 500
CY C + GH + +C PD + C CG GH+++ C +
Sbjct: 662 CYRCLELGHWAHDCRSPDDRQNMCIRCGVVGHMAKVCTSQ 701
Score = 24.2 bits (50), Expect = 3.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +3
Query: 87 SVCYKCNRTGHFARECT 137
++C +C GH A+ CT
Sbjct: 683 NMCIRCGVVGHMAKVCT 699
>AB090812-1|BAC57899.1| 541|Anopheles gambiae gag-like protein
protein.
Length = 541
Score = 52.0 bits (119), Expect = 2e-08
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +3
Query: 177 QREKCFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIA 347
+R++C++C GH A C+ DR C RC GH AR+C+ +C ++ GH++
Sbjct: 473 ERQRCYRCLERGHLAHACRSSTDRQQLCIRCGSEGHKARDCSSYVKCAACGGPHRIGHMS 532
Query: 348 RNCP 359
P
Sbjct: 533 CEHP 536
Score = 48.4 bits (110), Expect = 2e-07
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +3
Query: 297 SPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKP-- 470
+P+ CY C + GH+A C + Q C C GH +R+C K C CG P
Sbjct: 471 APERQRCYRCLERGHLAHACRSS--TDRQQLCIRCGSEGHKARDCSSYVK-CAACGGPHR 527
Query: 471 -GHIS 482
GH+S
Sbjct: 528 IGHMS 532
Score = 40.7 bits (91), Expect = 4e-05
Identities = 22/70 (31%), Positives = 29/70 (41%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 272
CY+C GH A C + +RQ + C +C GH ARDC +C C G
Sbjct: 477 CYRCLERGHLAHACR--------SSTDRQ-QLCIRCGSEGHKARDCSSYV-KCAACGGPH 526
Query: 273 HIARECAQSP 302
I + P
Sbjct: 527 RIGHMSCEHP 536
Score = 39.9 bits (89), Expect = 7e-05
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +3
Query: 384 QTCYNCNKSGHISRNCPDGT---KTCYVCGKPGHISRDC 491
Q CY C + GH++ C T + C CG GH +RDC
Sbjct: 475 QRCYRCLERGHLAHACRSSTDRQQLCIRCGSEGHKARDC 513
Score = 24.2 bits (50), Expect = 3.6
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +3
Query: 90 VCYKCNRTGHFARECT 137
+C +C GH AR+C+
Sbjct: 499 LCIRCGSEGHKARDCS 514
>AB090817-1|BAC57909.1| 344|Anopheles gambiae gag-like protein
protein.
Length = 344
Score = 46.0 bits (104), Expect = 1e-06
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +3
Query: 303 DEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCG 464
+E CY C K GH + +C E R N C+ C SGH + C + K C CG
Sbjct: 273 EEQKCYKCWKVGHTSYHCREPDRSN---LCWKCGLSGHKKQACTNSVK-CLDCG 322
Score = 40.7 bits (91), Expect = 4e-05
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 384 QTCYNCNKSGHISRNC--PDGTKTCYVCGKPGHISRDC 491
Q CY C K GH S +C PD + C+ CG GH + C
Sbjct: 275 QKCYKCWKVGHTSYHCREPDRSNLCWKCGLSGHKKQAC 312
Score = 39.9 bits (89), Expect = 7e-05
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 177 QREKCFKCNRTGHFARDCKE--EADRCYRCNGTGHIARECAQSPDEPSCYNC 326
+ +KC+KC + GH + C+E ++ C++C +GH + C S C +C
Sbjct: 273 EEQKCYKCWKVGHTSYHCREPDRSNLCWKCGLSGHKKQACTNS---VKCLDC 321
Score = 35.5 bits (78), Expect = 0.001
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 237 EADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 356
E +CY+C GH + C + C+ C +GH + C
Sbjct: 273 EEQKCYKCWKVGHTSYHCREPDRSNLCWKCGLSGHKKQAC 312
Score = 29.9 bits (64), Expect = 0.072
Identities = 16/61 (26%), Positives = 24/61 (39%)
Frame = +3
Query: 78 MSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYR 257
M CYKC + GH + C + + C+KC +GH + C +C
Sbjct: 272 MEEQKCYKCWKVGHTSYHCREPD----------RSNLCWKCGLSGHKKQACTNSV-KCLD 320
Query: 258 C 260
C
Sbjct: 321 C 321
Score = 27.1 bits (57), Expect = 0.50
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 84 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQ 179
S++C+KC +GH + CT V D G Q
Sbjct: 296 SNLCWKCGLSGHKKQACT-NSVKCLDCGTRSQ 326
Score = 24.2 bits (50), Expect = 3.6
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 450 CYVCGKPGHISRDCDE 497
CY C K GH S C E
Sbjct: 277 CYKCWKVGHTSYHCRE 292
>AB090824-1|BAC57923.1| 298|Anopheles gambiae gag-like protein
protein.
Length = 298
Score = 43.2 bits (97), Expect = 7e-06
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +3
Query: 297 SPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 476
S + C+ C + GH+ R C +G N + C C + H + NC + K C +CG P
Sbjct: 230 SAESRRCFRCLERGHMVREC-QG--TNRSSLCIRCGAANHKAVNCTNDVK-CLLCGGPHR 285
Query: 477 IS 482
I+
Sbjct: 286 IA 287
Score = 40.7 bits (91), Expect = 4e-05
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 237 EADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 356
E+ RC+RC GH+ REC + C C H A NC
Sbjct: 232 ESRRCFRCLERGHMVRECQGTNRSSLCIRCGAANHKAVNC 271
Score = 37.1 bits (82), Expect = 5e-04
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +3
Query: 177 QREKCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIA 347
+ +CF+C GH R+C+ + C RC H A C ++ C C IA
Sbjct: 232 ESRRCFRCLERGHMVRECQGTNRSSLCIRCGAANHKAVNCT---NDVKCLLCGGPHRIA 287
Score = 36.3 bits (80), Expect = 8e-04
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 272
C++C GH REC G NR C +C H A +C + +C C G
Sbjct: 236 CFRCLERGHMVREC---------QGTNRS-SLCIRCGAANHKAVNCTNDV-KCLLCGGPH 284
Query: 273 HI-ARECA 293
I A CA
Sbjct: 285 RIAAASCA 292
Score = 23.0 bits (47), Expect = 8.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +3
Query: 84 SSVCYKCNRTGHFARECT 137
SS+C +C H A CT
Sbjct: 255 SSLCIRCGAANHKAVNCT 272
>M93690-1|AAA29364.1| 613|Anopheles gambiae ORF1 protein.
Length = 613
Score = 42.7 bits (96), Expect = 9e-06
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 174 RQREKCFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECAQSPDEPSCYNCN 329
++ +C++C GH ARDC+ DR C RC GH A C +E C C+
Sbjct: 546 KEHLRCYRCLEHGHNARDCRSPVDRQNVCIRCGQEGHKAGTCM---EEIRCGKCD 597
Score = 41.5 bits (93), Expect = 2e-05
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 272
CY+C GH AR+C + +RQ C +C + GH A C EE RC +C+G
Sbjct: 551 CYRCLEHGHNARDCR--------SPVDRQ-NVCIRCGQEGHKAGTCMEEI-RCGKCDGPH 600
Query: 273 HIA-RECAQS 299
I R C +S
Sbjct: 601 VIGDRTCDRS 610
Score = 38.3 bits (85), Expect = 2e-04
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 315 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHI-SRDC 491
CY C + GH AR+C D N C C + GH + C + + C C P I R C
Sbjct: 551 CYRCLEHGHNARDC-RSPVDRQN-VCIRCGQEGHKAGTCMEEIR-CGKCDGPHVIGDRTC 607
Query: 492 D 494
D
Sbjct: 608 D 608
Score = 36.3 bits (80), Expect = 8e-04
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +3
Query: 390 CYNCNKSGHISRNC---PDGTKTCYVCGKPGHISRDCDEE 500
CY C + GH +R+C D C CG+ GH + C EE
Sbjct: 551 CYRCLEHGHNARDCRSPVDRQNVCIRCGQEGHKAGTCMEE 590
>AB090822-1|BAC57919.1| 468|Anopheles gambiae gag-like protein
protein.
Length = 468
Score = 42.3 bits (95), Expect = 1e-05
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 282 RECAQSPDEP-SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYV 458
+E +P E CY C + GH++R+C N + C C SGH++ C + C
Sbjct: 394 KEAPHTPIEKLRCYRCLERGHVSRDC--HSPVNHSNVCIRCGTSGHLAATC-EAEVRCAS 450
Query: 459 CGKP 470
C P
Sbjct: 451 CAGP 454
Score = 41.5 bits (93), Expect = 2e-05
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 177 QREKCFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECAQSPDEPSCYNCNKTG 338
++ +C++C GH +RDC + C RC +GH+A C SC ++ G
Sbjct: 402 EKLRCYRCLERGHVSRDCHSPVNHSNVCIRCGTSGHLAATCEAEVRCASCAGPHRMG 458
Score = 39.9 bits (89), Expect = 7e-05
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 390 CYNCNKSGHISRNC---PDGTKTCYVCGKPGHISRDCDEE 500
CY C + GH+SR+C + + C CG GH++ C+ E
Sbjct: 406 CYRCLERGHVSRDCHSPVNHSNVCIRCGTSGHLAATCEAE 445
Score = 39.5 bits (88), Expect = 9e-05
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 272
CY+C GH +R+C + N C +C +GH A C+ E RC C G
Sbjct: 406 CYRCLERGHVSRDC--------HSPVNHS-NVCIRCGTSGHLAATCEAEV-RCASCAGPH 455
Query: 273 HI-ARECAQS 299
+ + +C QS
Sbjct: 456 RMGSAQCVQS 465
Score = 27.9 bits (59), Expect = 0.29
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 450 CYVCGKPGHISRDCDEERN 506
CY C + GH+SRDC N
Sbjct: 406 CYRCLERGHVSRDCHSPVN 424
Score = 25.8 bits (54), Expect = 1.2
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 84 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQ-REKCFKCN 203
S+VC +C +GH A C A AG +R +C + N
Sbjct: 426 SNVCIRCGTSGHLAATCEAEVRCASCAGPHRMGSAQCVQSN 466
>AB090819-1|BAC57913.1| 400|Anopheles gambiae gag-like protein
protein.
Length = 400
Score = 41.5 bits (93), Expect = 2e-05
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 186 KCFKCNRTGHFARDC--KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNK 332
KCFKC + GH +C ++ + C +C GH REC P+ +C +C +
Sbjct: 329 KCFKCWKLGHKGFECTGQDRSKLCIKCGQEGHKIREC---PNAMTCLDCRE 376
Score = 37.9 bits (84), Expect = 3e-04
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Frame = +3
Query: 246 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNK---SGH 416
+C++C GH EC C C + GH R CP TC +C + H
Sbjct: 329 KCFKCWKLGHKGFECTGQDRSKLCIKCGQEGHKIRECPNA------MTCLDCREDMVEPH 382
Query: 417 I--SRNCPD 437
I S CP+
Sbjct: 383 ITGSLRCPN 391
Score = 35.5 bits (78), Expect = 0.001
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +3
Query: 390 CYNCNKSGHISRNCP--DGTKTCYVCGKPGHISRDC 491
C+ C K GH C D +K C CG+ GH R+C
Sbjct: 330 CFKCWKLGHKGFECTGQDRSKLCIKCGQEGHKIREC 365
Score = 33.5 bits (73), Expect = 0.006
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 260
C+KC + GH ECT G +R + C KC + GH R+C A C C
Sbjct: 330 CFKCWKLGHKGFECT---------GQDRSK-LCIKCGQEGHKIREC-PNAMTCLDC 374
Score = 26.6 bits (56), Expect = 0.67
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 84 SSVCYKCNRTGHFAREC 134
S +C KC + GH REC
Sbjct: 349 SKLCIKCGQEGHKIREC 365
Score = 23.0 bits (47), Expect = 8.2
Identities = 7/24 (29%), Positives = 12/24 (50%)
Frame = -1
Query: 126 GRSAPSCCTCSIRLNSFSIRCITC 55
G+ C CS+R + ++C C
Sbjct: 310 GKLKVGWCVCSLREATVQVKCFKC 333
>AF387862-1|AAL56547.1| 476|Anopheles gambiae gag polyprotein
protein.
Length = 476
Score = 37.9 bits (84), Expect = 3e-04
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 372 DNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDCDEERN 506
D + + ++S I R P+ TC+ C KPGH+ RDC E N
Sbjct: 178 DEAQKRMEKSHQSESILRVGPEKKITCHRCRKPGHMKRDCPMESN 222
Score = 29.5 bits (63), Expect = 0.095
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 312 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC 431
+C+ C K GH+ R+CP N+ T + NC
Sbjct: 203 TCHRCRKPGHMKRDCPM--ESNNTPTSTTMRDYSRKNENC 240
Score = 29.1 bits (62), Expect = 0.13
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +3
Query: 195 KCNRTGHFARDCKEEADRCYRCNGTGHIAREC-AQSPDEPSCYNCNKTGHIARNCPEGG 368
K +++ R E+ C+RC GH+ R+C +S + P+ NC G
Sbjct: 186 KSHQSESILRVGPEKKITCHRCRKPGHMKRDCPMESNNTPTSTTMRDYSRKNENCSSSG 244
Score = 27.1 bits (57), Expect = 0.50
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 189 CFKCNRTGHFARDCKEEAD 245
C +C + GH RDC E++
Sbjct: 204 CHRCRKPGHMKRDCPMESN 222
Score = 25.0 bits (52), Expect = 2.0
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = +3
Query: 93 CYKCNRTGHFAREC 134
C++C + GH R+C
Sbjct: 204 CHRCRKPGHMKRDC 217
>AB090820-1|BAC57915.1| 527|Anopheles gambiae gag-like protein
protein.
Length = 527
Score = 37.9 bits (84), Expect = 3e-04
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +3
Query: 315 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCG 464
C+ C + GHIA C G D S + C C H + C + K C +CG
Sbjct: 466 CFRCLERGHIAATCT--GEDRSKR-CLRCGDQTHKASGCTNEVK-CMLCG 511
Score = 37.5 bits (83), Expect = 4e-04
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +3
Query: 177 QREKCFKCNRTGHFARDC--KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIA 347
Q +CF+C GH A C ++ + RC RC H A C C ++ G A
Sbjct: 462 QLTRCFRCLERGHIAATCTGEDRSKRCLRCGDQTHKASGCTNEVKCMLCGGAHRIGAAA 520
Score = 36.3 bits (80), Expect = 8e-04
Identities = 16/48 (33%), Positives = 18/48 (37%)
Frame = +3
Query: 213 HFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 356
H A + RC+RC GHIA C C C H A C
Sbjct: 454 HEAPKVSGQLTRCFRCLERGHIAATCTGEDRSKRCLRCGDQTHKASGC 501
Score = 35.5 bits (78), Expect = 0.001
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 272
C++C GH A CT G +R + +C +C H A C E +C C G
Sbjct: 466 CFRCLERGHIAATCT---------GEDRSK-RCLRCGDQTHKASGCTNEV-KCMLCGGAH 514
Query: 273 HI-ARECAQSP 302
I A C P
Sbjct: 515 RIGAAACGGQP 525
Score = 33.5 bits (73), Expect = 0.006
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +3
Query: 390 CYNCNKSGHISRNCP--DGTKTCYVCGKPGHISRDCDEE 500
C+ C + GHI+ C D +K C CG H + C E
Sbjct: 466 CFRCLERGHIAATCTGEDRSKRCLRCGDQTHKASGCTNE 504
>AB090821-1|BAC57917.1| 353|Anopheles gambiae gag-like protein
protein.
Length = 353
Score = 37.5 bits (83), Expect = 4e-04
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = +3
Query: 186 KCFKCNRTGHFARDC--KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIA 347
+CF+C GH DC ++ + C C H A C +P C C IA
Sbjct: 290 RCFRCLERGHTTADCAGEDRSSLCLHCGAADHRAASCT---SDPKCIVCGGPHRIA 342
Score = 37.1 bits (82), Expect = 5e-04
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 231 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 356
++ A RC+RC GH +CA C +C H A +C
Sbjct: 285 QQSAVRCFRCLERGHTTADCAGEDRSSLCLHCGAADHRAASC 326
Score = 31.5 bits (68), Expect = 0.023
Identities = 20/76 (26%), Positives = 29/76 (38%)
Frame = +3
Query: 75 KMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCY 254
+ S+ C++C GH +C AG +R C C H A C + +C
Sbjct: 285 QQSAVRCFRCLERGHTTADC---------AGEDRS-SLCLHCGAADHRAASCTSD-PKCI 333
Query: 255 RCNGTGHIARECAQSP 302
C G IA + P
Sbjct: 334 VCGGPHRIAAPMCKGP 349
Score = 30.7 bits (66), Expect = 0.041
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +3
Query: 342 IARNCPEGGRDNSNQTCYNCNKSGHISRNC--PDGTKTCYVCGKPGHISRDCDEE 500
+ R+ P+ + S C+ C + GH + +C D + C CG H + C +
Sbjct: 277 LVRSAPK--QQQSAVRCFRCLERGHTTADCAGEDRSSLCLHCGAADHRAASCTSD 329
>AB090814-1|BAC57903.1| 499|Anopheles gambiae gag-like protein
protein.
Length = 499
Score = 36.7 bits (81), Expect = 6e-04
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 246 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 356
RCYRC T HI+++C C + GH A C
Sbjct: 430 RCYRCWQTDHISQDCCGPDRRDCCLRGGEKGHFAATC 466
Score = 35.5 bits (78), Expect = 0.001
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +3
Query: 171 NRQREKCFKCNRTGHFARDC--KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGH 341
N +C++C +T H ++DC + D C R GH A C P C + + H
Sbjct: 425 NIPSRRCYRCWQTDHISQDCCGPDRRDCCLRGGEKGHFAATCRLPPRCVLCPDGSNAHH 483
Score = 34.3 bits (75), Expect = 0.003
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 381 NQTCYNCNKSGHISRNC--PDGTKTCYVCGKPGHISRDC 491
++ CY C ++ HIS++C PD C G+ GH + C
Sbjct: 428 SRRCYRCWQTDHISQDCCGPDRRDCCLRGGEKGHFAATC 466
Score = 31.1 bits (67), Expect = 0.031
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 260
CY+C +T H +++C G +R R+ C + GHFA C+ RC C
Sbjct: 431 CYRCWQTDHISQDC---------CGPDR-RDCCLRGGEKGHFAATCR-LPPRCVLC 475
>AB090815-1|BAC57905.1| 492|Anopheles gambiae gag-like protein
protein.
Length = 492
Score = 36.3 bits (80), Expect = 8e-04
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 180 REKCFKCNRTGHFARDCK 233
+ +CFKC TGHF+RDCK
Sbjct: 415 KRRCFKCWETGHFSRDCK 432
Score = 33.9 bits (74), Expect = 0.004
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +3
Query: 246 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHI---ARNCPEGGRDNSNQTC 392
RC++C TGH +R+C + PD C + K G + A N P+ + QTC
Sbjct: 417 RCFKCWETGHFSRDC-KGPDRTDC-DAVKQGILPKHASNLPDVSFVHRVQTC 466
Score = 29.9 bits (64), Expect = 0.072
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 93 CYKCNRTGHFAREC 134
C+KC TGHF+R+C
Sbjct: 418 CFKCWETGHFSRDC 431
Score = 26.6 bits (56), Expect = 0.67
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 444 KTCYVCGKPGHISRDC 491
+ C+ C + GH SRDC
Sbjct: 416 RRCFKCWETGHFSRDC 431
Score = 26.2 bits (55), Expect = 0.88
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Frame = +3
Query: 390 CYNCNKSGHISRNC--PDGT 443
C+ C ++GH SR+C PD T
Sbjct: 418 CFKCWETGHFSRDCKGPDRT 437
>AB090818-1|BAC57911.1| 285|Anopheles gambiae gag-like protein
protein.
Length = 285
Score = 33.5 bits (73), Expect = 0.006
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +3
Query: 177 QREKCFKCNRTGHFARDC--KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGH 341
+R +C++C GH A C K+ + +C+RC H C + C + GH
Sbjct: 210 RRRQCYRCYEYGHTAARCHGKDRSSKCHRCAEDKH-EGPCTRERKCLGCEGPDAIGH 265
Score = 31.5 bits (68), Expect = 0.023
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 234 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGH 341
E +CYRC GH A C C+ C + H
Sbjct: 209 ERRRQCYRCYEYGHTAARCHGKDRSSKCHRCAEDKH 244
Score = 30.7 bits (66), Expect = 0.041
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 315 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGH 416
CY C + GH A C G+D S++ C+ C + H
Sbjct: 214 CYRCYEYGHTAARC--HGKDRSSK-CHRCAEDKH 244
Score = 28.7 bits (61), Expect = 0.17
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +3
Query: 390 CYNCNKSGHISRNC--PDGTKTCYVCGKPGHISRDCDEER 503
CY C + GH + C D + C+ C + H C ER
Sbjct: 214 CYRCYEYGHTAARCHGKDRSSKCHRCAEDKH-EGPCTRER 252
Score = 26.6 bits (56), Expect = 0.67
Identities = 20/68 (29%), Positives = 24/68 (35%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 272
CY+C GH A C G +R KC +C H C E +C C G
Sbjct: 214 CYRCYEYGHTAARC---------HGKDRS-SKCHRCAEDKH-EGPCTRER-KCLGCEGPD 261
Query: 273 HIARECAQ 296
I Q
Sbjct: 262 AIGHSLGQ 269
>AF295693-1|AAL55241.1| 786|Anopheles gambiae polyprotein protein.
Length = 786
Score = 32.3 bits (70), Expect = 0.013
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 450 CYVCGKPGHISRDCDEERN 506
C+ CG+PGH RDC E N
Sbjct: 76 CFFCGQPGHKKRDCKEFLN 94
Score = 29.5 bits (63), Expect = 0.095
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 189 CFKCNRTGHFARDCKEEADR 248
CF C + GH RDCKE +R
Sbjct: 76 CFFCGQPGHKKRDCKEFLNR 95
Score = 25.4 bits (53), Expect = 1.5
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 291 AQSPDEP-SCYNCNKTGHIARNCPE 362
A+S +P +C+ C + GH R+C E
Sbjct: 67 AKSESKPGACFFCGQPGHKKRDCKE 91
Score = 23.4 bits (48), Expect = 6.2
Identities = 7/23 (30%), Positives = 12/23 (52%)
Frame = +3
Query: 72 SKMSSSVCYKCNRTGHFARECTQ 140
S+ C+ C + GH R+C +
Sbjct: 69 SESKPGACFFCGQPGHKKRDCKE 91
>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
polyprotein protein.
Length = 1726
Score = 30.3 bits (65), Expect = 0.054
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 174 RQREKCFKCNRTGHFARDCKEEADRCYRCNGTGH 275
R+ CF C R GH AR+C+ C +C H
Sbjct: 372 RKHGLCFNCLRKGHSARECR-STYVCQQCKRKHH 404
Score = 30.3 bits (65), Expect = 0.054
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 315 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDG 440
C+NC + GH AR C S C C + H S+ C G
Sbjct: 377 CFNCLRKGHSAREC------RSTYVCQQCKRKHH-SKLCKIG 411
Score = 27.5 bits (58), Expect = 0.38
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 90 VCYKCNRTGHFAREC 134
+C+ C R GH AREC
Sbjct: 376 LCFNCLRKGHSAREC 390
Score = 25.8 bits (54), Expect = 1.2
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 249 CYRCNGTGHIARECAQSPDEPSCYNCNKTGH 341
C+ C GH AREC + C C + H
Sbjct: 377 CFNCLRKGHSARECRST---YVCQQCKRKHH 404
>DQ370037-1|ABD18598.1| 121|Anopheles gambiae putative TIL domain
polypeptide protein.
Length = 121
Score = 28.7 bits (61), Expect = 0.17
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 258 CNGTGHIARECAQSPDEPSCYNCNKTGHIA--RNCPEG 365
C + EC S D+ +C N + H+A ++C EG
Sbjct: 58 CTDPREVYNECGSSCDDRTCENIRRGDHLACTKHCVEG 95
>AJ292755-1|CAC00630.1| 837|Anopheles gambiae integrin beta subunit
protein.
Length = 837
Score = 24.2 bits (50), Expect = 3.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 126 GRSAPSCCTCSIRLNSFSIRCITC 55
GR C TC+ R N F C+ C
Sbjct: 668 GRYCEKCPTCAGRCNEFK-HCVQC 690
>EF990672-1|ABS30733.1| 466|Anopheles gambiae voltage-gated calcium
channel beta subunitprotein.
Length = 466
Score = 23.4 bits (48), Expect = 6.2
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -3
Query: 475 CPGLPQT*QVLVPSGQLREMCPDLLQL*QVWLELSRPP 362
CP P+ V++ QL E C L + + + + PP
Sbjct: 392 CP--PEMFDVILDENQLEEACNHLAEYLEAYWRATHPP 427
>AY805323-1|AAV66543.1| 459|Anopheles gambiae beta
subunit-GABA-A-gated chloride channelprotein.
Length = 459
Score = 23.4 bits (48), Expect = 6.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 600 LSSVRGIIIYIVNCFVY 550
+S V+ I IY+V CFV+
Sbjct: 279 ISYVKAIDIYLVMCFVF 295
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 573,662
Number of Sequences: 2352
Number of extensions: 12728
Number of successful extensions: 167
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63141405
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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