Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_C20
(642 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 113 7e-26
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 111 4e-25
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 100 2e-21
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 83 2e-16
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 70 1e-12
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 64 6e-11
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 59 3e-09
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 52 3e-07
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 52 3e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 52 4e-07
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 52 4e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 52 4e-07
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 51 8e-07
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 51 8e-07
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 51 8e-07
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 49 3e-06
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 40 0.001
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 39 0.002
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 39 0.002
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 39 0.003
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 39 0.003
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 38 0.006
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 38 0.006
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 37 0.010
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 37 0.013
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 36 0.017
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 36 0.017
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 35 0.040
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 35 0.053
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 33 0.16
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 33 0.16
At5g51300.2 68418.m06360 splicing factor-related contains simila... 33 0.21
At5g51300.1 68418.m06359 splicing factor-related contains simila... 33 0.21
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.21
At3g31950.1 68416.m04046 hypothetical protein 32 0.28
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 32 0.37
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 31 0.49
At5g47430.1 68418.m05844 expressed protein 31 0.49
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 31 0.49
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 31 0.65
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.86
At5g48030.1 68418.m05935 DNAJ heat shock protein, mitochondriall... 30 1.1
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 30 1.1
At4g19130.1 68417.m02823 replication protein-related similar to ... 30 1.1
At4g17410.1 68417.m02607 expressed protein 30 1.1
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.1
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.1
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 30 1.5
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 1.5
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 29 2.0
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 29 2.0
At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family pr... 29 2.0
At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family pr... 29 2.0
At5g26820.1 68418.m03200 ferroportin-related low similarity to f... 29 2.6
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 29 2.6
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 2.6
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 29 3.5
At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein... 29 3.5
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 29 3.5
At4g06479.1 68417.m00885 hypothetical protein 29 3.5
At2g33090.1 68415.m04057 expressed protein ; expression supporte... 29 3.5
At5g47390.1 68418.m05840 myb family transcription factor contain... 28 4.6
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 28 4.6
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 28 4.6
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 28 4.6
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 28 4.6
At4g06526.1 68417.m00938 hypothetical protein 28 6.1
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 8.0
At5g21140.1 68418.m02524 expressed protein 27 8.0
At3g57000.1 68416.m06345 nucleolar essential protein-related con... 27 8.0
At2g06904.1 68415.m00778 hypothetical protein 27 8.0
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 113 bits (273), Expect = 7e-26
Identities = 62/171 (36%), Positives = 80/171 (46%), Gaps = 34/171 (19%)
Frame = +3
Query: 87 SVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC------------ 230
S CY C GH +++C GG G +R E C+ C TGHFARDC
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGAT 159
Query: 231 KEEADRCYRCNGTGHIARECAQSP------------DEPSCYNCNKTGHIARNCPE---G 365
K D CY C GH+AR+C Q CY C GH AR+C +
Sbjct: 160 KGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAA 219
Query: 366 GRDNS----NQTCYNCNKSGHISRNCP---DGTKTCYVCGKPGHISRDCDE 497
G S + TCY+C GHI+R+C ++ CY CG GH++RDCD+
Sbjct: 220 GNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQ 270
Score = 112 bits (270), Expect = 2e-25
Identities = 57/164 (34%), Positives = 76/164 (46%), Gaps = 31/164 (18%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEA---------- 242
CY C TGHFAR+CT G G + + C+ C GH ARDC +++
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 243 ----DRCYRCNGTGHIARECAQ----------SPDEPSCYNCNKTGHIARNCPEGGRDNS 380
D CY C GH AR+C Q +CY+C GHIAR+C +
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC--ATKRQP 251
Query: 381 NQTCYNCNKSGHISRNCPD-------GTKTCYVCGKPGHISRDC 491
++ CY C SGH++R+C CY CGK GH +R+C
Sbjct: 252 SRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 109 bits (261), Expect = 2e-24
Identities = 56/139 (40%), Positives = 72/139 (51%), Gaps = 19/139 (13%)
Frame = +3
Query: 72 SKMSSSVCYKCNRTGHFARECTQGGVGARD--AGFNRQREKCFKCNRTGHFARDCKEE-- 239
+K + CY C GH AR+CTQ VG D + C+ C GHFARDC ++
Sbjct: 159 TKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVA 218
Query: 240 ----------ADRCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCPE---GGRD 374
+ CY C G GHIAR+CA + +PS CY C +GH+AR+C + GG
Sbjct: 219 AGNVRSGGGGSGTCYSCGGVGHIARDCA-TKRQPSRGCYQCGGSGHLARDCDQRGSGGGG 277
Query: 375 NSNQTCYNCNKSGHISRNC 431
N N CY C K GH +R C
Sbjct: 278 NDN-ACYKCGKEGHFAREC 295
Score = 61.7 bits (143), Expect = 4e-10
Identities = 37/97 (38%), Positives = 46/97 (47%), Gaps = 30/97 (30%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQ--------------------GGVG--ARDAGFNRQREK-CFKCN 203
CY C GHFAR+CTQ GGVG ARD RQ + C++C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 204 RTGHFARDCKEEA-------DRCYRCNGTGHIARECA 293
+GH ARDC + + CY+C GH AREC+
Sbjct: 260 GSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/56 (42%), Positives = 31/56 (55%)
Frame = +3
Query: 75 KMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEA 242
+ S CY+C +GH AR+C Q G G G N C+KC + GHFAR+C A
Sbjct: 249 RQPSRGCYQCGGSGHLARDCDQRGSGG---GGNDNA--CYKCGKEGHFARECSSVA 299
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
Frame = +3
Query: 369 RDNSNQTCYNCNKSGHISRNC------------PDGTKTCYVCGKPGHISRDCDEERN 506
R CYNC + GHIS++C G + CY CG GH +RDC N
Sbjct: 95 RGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGN 152
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 111 bits (267), Expect = 4e-25
Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 35/168 (20%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK------------- 233
CY C GHFAR+C Q G G G C+ C GH A+DC+
Sbjct: 132 CYMCGDVGHFARDCRQSG-GGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGG 190
Query: 234 --EEADRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGGRDN 377
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG
Sbjct: 191 RGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GG 249
Query: 378 SNQTCYNCNKSGHISRNCP----------DGTKTCYVCGKPGHISRDC 491
+ CY C +GH++R+C G+ C++CGK GH +R+C
Sbjct: 250 GGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 104 bits (250), Expect = 4e-23
Identities = 60/187 (32%), Positives = 80/187 (42%), Gaps = 39/187 (20%)
Frame = +3
Query: 51 LNKLYI*SKMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQRE----KCFKCNRTGHF 218
LNK S+ S C+ C GH A++C G G G +R +C+ C GHF
Sbjct: 82 LNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHF 141
Query: 219 ARDCKEEAD-----------RCYRCNGTGHIAREC-------------AQSPDEPSCYNC 326
ARDC++ CY C GH+A++C + CY C
Sbjct: 142 ARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMC 201
Query: 327 NKTGHIARNCPEGGRDN---SNQTCYNCNKSGHISRNCPD--------GTKTCYVCGKPG 473
GH AR+C + G N TCY C GHI++ C G + CY CG G
Sbjct: 202 GGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTG 261
Query: 474 HISRDCD 494
H++RDCD
Sbjct: 262 HLARDCD 268
Score = 70.1 bits (164), Expect = 1e-12
Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Frame = +3
Query: 123 ARECTQGGVGARDAGFNRQREK---CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECA 293
A E T G G+ + N R CF C GH A+DC + G G
Sbjct: 71 AIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGR------ 124
Query: 294 QSPDEPSCYNCNKTGHIARNCPEGGRDNS------NQTCYNCNKSGHISRNCPDGT---- 443
+S E CY C GH AR+C + G NS + CY+C + GH++++C G+
Sbjct: 125 RSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNR 184
Query: 444 -----------KTCYVCGKPGHISRDC 491
CY+CG GH +RDC
Sbjct: 185 YGGGGGRGSGGDGCYMCGGVGHFARDC 211
Score = 55.2 bits (127), Expect = 3e-08
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEA 242
CY+C TGH AR+C + G G+ G KCF C + GHFAR+C A
Sbjct: 254 CYECGGTGHLARDCDRRGSGSSGGGGG--SNKCFICGKEGHFARECTSVA 301
Score = 54.4 bits (125), Expect = 6e-08
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Frame = +3
Query: 87 SVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE--------- 239
S CY C GH A+ CT + + G R C++C TGH ARDC
Sbjct: 224 STCYTCGGVGHIAKVCTSK-IPSGGGGGGRA---CYECGGTGHLARDCDRRGSGSSGGGG 279
Query: 240 -ADRCYRCNGTGHIAREC 290
+++C+ C GH AREC
Sbjct: 280 GSNKCFICGKEGHFAREC 297
Score = 32.3 bits (70), Expect = 0.28
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 84 SSVCYKCNRTGHFARECT 137
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 99.5 bits (237), Expect = 2e-21
Identities = 50/136 (36%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Frame = +3
Query: 87 SVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 266
++C C R GHFAR+C+ V C C GH A +C E+ RC+ C
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV-------------CNNCGLPGHIAAECTAES-RCWNCRE 100
Query: 267 TGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-GRDNSNQTCYNCNKSGHISRNCPDGT 443
GH+A C+ +E C++C K+GH AR+C R + C NC K GH++ +C +
Sbjct: 101 PGHVASNCS---NEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTN-D 156
Query: 444 KTCYVCGKPGHISRDC 491
K C C GHI+RDC
Sbjct: 157 KACKNCRTSGHIARDC 172
Score = 88.2 bits (209), Expect = 4e-18
Identities = 44/115 (38%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Frame = +3
Query: 177 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 356
Q C C R GHFARDC C C GHIA EC E C+NC + GH+A NC
Sbjct: 53 QGNLCNNCKRPGHFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNC 108
Query: 357 PEGGRDNSNQTCYNCNKSGHISRNCPDG------TKTCYVCGKPGHISRDCDEER 503
G C++C KSGH +R+C + + C C K GH++ DC ++
Sbjct: 109 SNEG------ICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTNDK 157
Score = 82.6 bits (195), Expect = 2e-16
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 8/149 (5%)
Frame = +3
Query: 81 SSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 260
+ +C+ C ++GH AR+C+ A D C C + GH A DC + C C
Sbjct: 110 NEGICHSCGKSGHRARDCSNSDSRAGDLRL------CNNCFKQGHLAADCTNDK-ACKNC 162
Query: 261 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG---RDNSNQTCYNCNKSGHISRNC 431
+GHIAR+C ++P C C+ +GH+AR+CP+G D ++ + G +SR
Sbjct: 163 RTSGHIARDCR---NDPVCNICSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGGLSRMS 219
Query: 432 PD--GTKT---CYVCGKPGHISRDCDEER 503
D G C+ CG GH + +C R
Sbjct: 220 RDREGVSAMIICHNCGGRGHRAYECPSAR 248
Score = 81.8 bits (193), Expect = 4e-16
Identities = 47/130 (36%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Frame = +3
Query: 87 SVCYKCNRTGHFARECTQGGV--GARDAGF---NRQREK-CFKCNRTGHFARDCKEEADR 248
SVC C GH A ECT R+ G N E C C ++GH ARDC R
Sbjct: 74 SVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSR 133
Query: 249 ------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKS 410
C C GH+A +C ++ +C NC +GHIAR+C ++ C C+ S
Sbjct: 134 AGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDC------RNDPVCNICSIS 184
Query: 411 GHISRNCPDG 440
GH++R+CP G
Sbjct: 185 GHVARHCPKG 194
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/71 (33%), Positives = 37/71 (52%)
Frame = +3
Query: 315 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDCD 494
C NC + GH AR+C ++ C NC GHI+ C ++ C+ C +PGH++ +C
Sbjct: 57 CNNCKRPGHFARDC------SNVSVCNNCGLPGHIAAECTAESR-CWNCREPGHVASNCS 109
Query: 495 EERN*HAPNNS 527
E H+ S
Sbjct: 110 NEGICHSCGKS 120
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 83.0 bits (196), Expect = 2e-16
Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 18/126 (14%)
Frame = +3
Query: 183 EKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKT 335
E CF C+ H A+ C E+++ C +C GH + C + +E S CYNC T
Sbjct: 74 EGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDT 133
Query: 336 GHIARNCPEGGRDNSNQ--TCYNCNKSGHISRNCPDGTK-------TCYVCGKPGHISRD 488
GH +CP D + +C+ C GHIS+NCP+ C VCG H+ +D
Sbjct: 134 GHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKD 193
Query: 489 CDEERN 506
C ++ N
Sbjct: 194 CPDKFN 199
Score = 59.7 bits (138), Expect = 2e-09
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Frame = +3
Query: 156 RDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRC-NGTGHIARECAQSPDEPSCYNCNK 332
+D ++++ FK + G DR R + T H R P E C+ C+
Sbjct: 30 KDPNKKKKKKSLFKKKKPG-------SSTDRPQRTGSSTRHPLRVPGMKPGE-GCFICHS 81
Query: 333 TGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGT------KTCYVCGKPGHISRDC 491
HIA+ CPE N+ C C + GH +NCP+ K CY CG GH C
Sbjct: 82 KTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHC 140
Score = 53.2 bits (122), Expect = 1e-07
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 12/113 (10%)
Frame = +3
Query: 84 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD------ 245
+ +C +C R GH + C + + +++ C+ C TGH C +
Sbjct: 98 NKICLQCRRRGHSLKNCPEKN------NESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKF 151
Query: 246 -RCYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRDNSNQ 386
C+ C G GHI++ C ++ P C C H+ ++CP+ S Q
Sbjct: 152 ASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPDKFNQESAQ 204
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 70.1 bits (164), Expect = 1e-12
Identities = 52/163 (31%), Positives = 73/163 (44%), Gaps = 25/163 (15%)
Frame = +3
Query: 78 MSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR--- 248
+SS Y + +F T+G A+ C+KC + GH+ARDC ++D
Sbjct: 208 VSSPTSYSVTKNSNFGDSDTRGYQNAKTG------TPCYKCGKEGHWARDCTVQSDTGPV 261
Query: 249 --------CYRCNGTGHIAREC-AQSPD---EPS----------CYNCNKTGHIARNCPE 362
C++C GH +R+C AQS + EP CY C K GH +R+C
Sbjct: 262 KSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCT- 320
Query: 363 GGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 491
G+ ++ Q +SG G CY CGK GH SRDC
Sbjct: 321 -GQSSNQQF-----QSGQAKSTSSTGD--CYKCGKAGHWSRDC 355
Score = 61.7 bits (143), Expect = 4e-10
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Frame = +3
Query: 72 SKMSSSVCYKCNRTGHFARECT-QGGVGARDAGFNRQRE---KCFKCNRTGHFARDCKEE 239
S ++ C+KC + GH++R+CT Q G + G + +C+KC + GH++RDC +
Sbjct: 263 STSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQ 322
Query: 240 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 356
+ +G A+ + + D CY C K GH +R+C
Sbjct: 323 SSNQQFQSGQ---AKSTSSTGD---CYKCGKAGHWSRDC 355
Score = 50.8 bits (116), Expect = 8e-07
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +3
Query: 72 SKMSSSVCYKCNRTGHFARECT-QGGVGARDAGFNRQREK---CFKCNRTGHFARDCKEE 239
S SS CYKC + GH++R+CT Q +G + C+KC + GH++RDC
Sbjct: 299 SSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSP 358
Query: 240 A 242
A
Sbjct: 359 A 359
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 64.5 bits (150), Expect = 6e-11
Identities = 42/143 (29%), Positives = 54/143 (37%), Gaps = 10/143 (6%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 272
CY C GH + C ++R+ CF C H A+ C + D CY C TG
Sbjct: 168 CYSCGEQGHTSFNCPTP---------TKRRKPCFICGSLEHGAKQCSKGHD-CYICKKTG 217
Query: 273 HIARECAQSPDEPS----CYNCNKTGHIARNC--PEGGRDNSNQTCYNCNKSGHI----S 422
H A++C S C C GH C D + CY C GH+
Sbjct: 218 HRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHLCCVEP 277
Query: 423 RNCPDGTKTCYVCGKPGHISRDC 491
N +CY CG+ GH C
Sbjct: 278 GNSLSWAVSCYRCGQLGHSGLAC 300
Score = 62.9 bits (146), Expect = 2e-10
Identities = 47/171 (27%), Positives = 62/171 (36%), Gaps = 38/171 (22%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR-------C 251
CY C +TGH A++C C +C GH CK E + C
Sbjct: 210 CYICKKTGHRAKDCPDKYKNGSKGAV------CLRCGDFGHDMILCKYEYSKEDLKDVQC 263
Query: 252 YRCNGTGHIARECAQSPDEP-----SCYNCNKTGHIARNCP---EGGRDNSNQT------ 389
Y C GH+ C P SCY C + GH C E +N + T
Sbjct: 264 YICKSFGHL---CCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFN 320
Query: 390 ------CYNCNKSGHISRNCPDGTKT-----------CYVCGKPGHISRDC 491
CY C + GH +R CP+ + CY C GH +R+C
Sbjct: 321 SREASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFAREC 371
Score = 60.9 bits (141), Expect = 7e-10
Identities = 36/125 (28%), Positives = 49/125 (39%), Gaps = 7/125 (5%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 272
CY C GH C + G A C++C + GH C + +
Sbjct: 263 CYICKSFGHLC--CVEPGNSLSWA------VSCYRCGQLGHSGLACGRHYEESNENDSA- 313
Query: 273 HIARECAQSPDEPSCYNCNKTGHIARNCPEG-------GRDNSNQTCYNCNKSGHISRNC 431
S + CY C + GH AR CP GR+ S CY CN SGH +R C
Sbjct: 314 -TPERLFNSREASECYRCGEEGHFARECPNSSSISTSHGRE-SQTLCYRCNGSGHFAREC 371
Query: 432 PDGTK 446
P+ ++
Sbjct: 372 PNSSQ 376
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +3
Query: 312 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 491
SCY+C + GH + NCP + + C+ C H ++ C G CY+C K GH ++DC
Sbjct: 167 SCYSCGEQGHTSFNCPTPTK--RRKPCFICGSLEHGAKQCSKG-HDCYICKKTGHRAKDC 223
Query: 492 DEE 500
++
Sbjct: 224 PDK 226
Score = 54.4 bits (125), Expect = 6e-08
Identities = 25/77 (32%), Positives = 37/77 (48%)
Frame = +3
Query: 84 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCN 263
+S CY+C GHFAREC + G + C++CN +GHFAR+C + R
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCNGSGHFARECPNSSQVSKRDR 382
Query: 264 GTGHIARECAQSPDEPS 314
T + + + E S
Sbjct: 383 ETSTTSHKSRKKNKENS 399
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 81 SSSVCYKCNRTGHFARECTQGG-VGARDAGFNRQREKCFKCNR 206
S ++CY+CN +GHFAREC V RD + K K N+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNK 396
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +3
Query: 432 PD-GTKTCYVCGKPGHISRDC 491
PD G +CY CG+ GH S +C
Sbjct: 161 PDAGWVSCYSCGEQGHTSFNC 181
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 58.8 bits (136), Expect = 3e-09
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Frame = +3
Query: 234 EEADRCYRCNGTGHIARECA-----QSPDEPSCYNCNKTGHIARNCPEGGRDNS-NQTCY 395
+EA+ C RC G GH C + CY CN GH+ C E G S +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 396 NCNKSGHISRNC-----PDGTKTCYVCGKPGHISRDC 491
C + GH C + +C++CG+ GH C
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQC 117
Score = 58.4 bits (135), Expect = 4e-09
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Frame = +3
Query: 177 QREKCFKCNRTGHFARDCKEEAD-------RCYRCNGTGHIARECAQSPDEP-----SCY 320
+ E C +C GH CK E +CY CN GH+ C P SCY
Sbjct: 24 EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHL---CCIEPGHTQSWTVSCY 80
Query: 321 NCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCY 455
C + GH C D+ + +C+ C + GH C + C+
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCF 125
Score = 51.6 bits (118), Expect = 4e-07
Identities = 40/143 (27%), Positives = 56/143 (39%), Gaps = 10/143 (6%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 272
CY+C + GH C G D+ CF C R GHF C C+ + +
Sbjct: 79 CYRCGQLGHTGLAC---GRHYDDS----VSPSCFICGREGHFEHQCHNSFSVCFPEDSSE 131
Query: 273 HIARECAQSPDEPSCYNCNKT-----GHIARNCPEGG----RDNSNQTCY-NCNKSGHIS 422
EC Q PD S T GH CP+ ++ S + + + N S +
Sbjct: 132 D---EC-QGPDSSSVRFQENTREEEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKST 187
Query: 423 RNCPDGTKTCYVCGKPGHISRDC 491
+ + CY C GHI+RDC
Sbjct: 188 SKGRETRRLCYECKGKGHIARDC 210
Score = 35.1 bits (77), Expect = 0.040
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Frame = +3
Query: 81 SSSVCYKCN----RTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR 248
SSSV ++ N GHF +C +R+ E N + +E
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCFQE-ISRE-EGFISLNSSSKSTSKGRETRRL 196
Query: 249 CYRCNGTGHIARECAQS 299
CY C G GHIAR+C S
Sbjct: 197 CYECKGKGHIARDCPNS 213
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 52.0 bits (119), Expect = 3e-07
Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 12/151 (7%)
Frame = +3
Query: 75 KMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCY 254
K+S S+ +TG F++ + RD + QR K + AR E+ + +
Sbjct: 189 KISRSLKSLNAKTGLFSKRMK---IIHRDPVLHAQRVAAIKKAKGTPAARKHASESMKAF 245
Query: 255 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQ-TCYNCNKSGHISRNC 431
N R + + C NC + GH CPE G + + C C GH R C
Sbjct: 246 FSNPVNREQRSLSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTC 305
Query: 432 P-------DGTKT----CYVCGKPGHISRDC 491
P G T C +CG+ GH SR C
Sbjct: 306 PKSKSIVTKGISTRYHKCGICGERGHNSRTC 336
Score = 41.9 bits (94), Expect = 3e-04
Identities = 25/89 (28%), Positives = 34/89 (38%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 272
C C GH R C + G + + KC C GH +R C++ C+G
Sbjct: 292 CRGCGGKGHNRRTCPKSK-SIVTKGISTRYHKCGICGERGHNSRTCRKPTGVNPSCSGEN 350
Query: 273 HIARECAQSPDEPSCYNCNKTGHIARNCP 359
+ E +C C K GH R CP
Sbjct: 351 --SGEDGVGKITYACGFCKKMGHNVRTCP 377
Score = 40.3 bits (90), Expect = 0.001
Identities = 35/125 (28%), Positives = 45/125 (36%), Gaps = 11/125 (8%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD--------- 245
C C + GH C + G A D F +C C GH R C +
Sbjct: 266 CKNCGQEGHRRHYCPELGTNA-DRKF-----RCRGCGGKGHNRRTCPKSKSIVTKGISTR 319
Query: 246 --RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHI 419
+C C GH +R C + P+ N + +G N E G C C K GH
Sbjct: 320 YHKCGICGERGHNSRTCRK----PTGVNPSCSGE---NSGEDGVGKITYACGFCKKMGHN 372
Query: 420 SRNCP 434
R CP
Sbjct: 373 VRTCP 377
Score = 39.5 bits (88), Expect = 0.002
Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Frame = +3
Query: 189 CFKCNRTGHFARDCKE---EADRCYRCNGTG---HIARECAQSPDEPS---------CYN 323
C C + GH C E ADR +RC G G H R C +S + C
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGISTRYHKCGI 325
Query: 324 CNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDCDEER 503
C + GH +R C + N + + N + G + + T C C K GH R C ++
Sbjct: 326 CGERGHNSRTCRKPTGVNPSCSGENSGEDG-VGKI----TYACGFCKKMGHNVRTCPSKQ 380
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Frame = +3
Query: 390 CYNCNKSGHISRNCPD-GTKT-----CYVCGKPGHISRDCDEERN 506
C NC + GH CP+ GT C CG GH R C + ++
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKS 310
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 52.0 bits (119), Expect = 3e-07
Identities = 31/89 (34%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Frame = +3
Query: 141 GGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRC------------YRCNGTGHIAR 284
GG G R G R C+KC GH ARDC E Y G G+
Sbjct: 116 GGYGGRGGG-GRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGG 174
Query: 285 ECAQSPDEPSCYNCNKTGHIARNCPEGGR 371
SCY+C ++GH AR+C GGR
Sbjct: 175 GRGGGGGGGSCYSCGESGHFARDCTSGGR 203
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +3
Query: 87 SVCYKCNRTGHFARECTQ--GGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 260
S CYKC GH AR+C++ GG G G+ G R CY C
Sbjct: 129 SDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSC 188
Query: 261 NGTGHIAREC 290
+GH AR+C
Sbjct: 189 GESGHFARDC 198
Score = 44.0 bits (99), Expect = 9e-05
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = +3
Query: 315 CYNCNKTGHIARNCPEGGRDNSNQTC-------YNCNKSGHIS--RNCPDGTKTCYVCGK 467
CY C + GH+AR+C EGG Y G+ R G +CY CG+
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 468 PGHISRDC 491
GH +RDC
Sbjct: 191 SGHFARDC 198
Score = 37.5 bits (83), Expect = 0.007
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGG 146
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 36.7 bits (81), Expect = 0.013
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 438 GTKTCYVCGKPGHISRDCDE 497
G CY CG+PGH++RDC E
Sbjct: 127 GGSDCYKCGEPGHMARDCSE 146
Score = 32.7 bits (71), Expect = 0.21
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 363 GGRDNSNQTCYNCNKSGHISRNCPDG 440
GGR S+ CY C + GH++R+C +G
Sbjct: 124 GGRGGSD--CYKCGEPGHMARDCSEG 147
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 51.6 bits (118), Expect = 4e-07
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 111 TGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK--EEADRCYRCNGTGHIAR 284
T F+R +G G +CF C GH+ARDC + ++CYRC GHI R
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 285 ECAQSP 302
C SP
Sbjct: 94 NCKNSP 99
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/49 (42%), Positives = 25/49 (51%)
Frame = +3
Query: 300 PDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 446
P C+NC GH AR+C G N CY C + GHI RNC + K
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 100
Score = 48.8 bits (111), Expect = 3e-06
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +3
Query: 240 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 356
A RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 47.2 bits (107), Expect = 9e-06
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Frame = +3
Query: 333 TGHIARNCPEGGRDNSNQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 485
T +R P G RD ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 486 DC 491
+C
Sbjct: 94 NC 95
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYR 257
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 60 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 104
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 51.6 bits (118), Expect = 4e-07
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 111 TGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK--EEADRCYRCNGTGHIAR 284
T F+R +G G +CF C GH+ARDC + ++CYRC GHI R
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 104
Query: 285 ECAQSP 302
C SP
Sbjct: 105 NCKNSP 110
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/49 (42%), Positives = 25/49 (51%)
Frame = +3
Query: 300 PDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 446
P C+NC GH AR+C G N CY C + GHI RNC + K
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 111
Score = 48.8 bits (111), Expect = 3e-06
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +3
Query: 240 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 356
A RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 106
Score = 47.2 bits (107), Expect = 9e-06
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Frame = +3
Query: 333 TGHIARNCPEGGRDNSNQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 485
T +R P G RD ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 104
Query: 486 DC 491
+C
Sbjct: 105 NC 106
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYR 257
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 71 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 115
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 51.6 bits (118), Expect = 4e-07
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 111 TGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK--EEADRCYRCNGTGHIAR 284
T F+R +G G +CF C GH+ARDC + ++CYRC GHI R
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 285 ECAQSP 302
C SP
Sbjct: 135 NCKNSP 140
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/49 (42%), Positives = 25/49 (51%)
Frame = +3
Query: 300 PDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 446
P C+NC GH AR+C G N CY C + GHI RNC + K
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 141
Score = 48.8 bits (111), Expect = 3e-06
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +3
Query: 240 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 356
A RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 47.2 bits (107), Expect = 9e-06
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Frame = +3
Query: 333 TGHIARNCPEGGRDNSNQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 485
T +R P G RD ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 486 DC 491
+C
Sbjct: 135 NC 136
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYR 257
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 101 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 145
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 50.8 bits (116), Expect = 8e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 186 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 302
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Frame = +3
Query: 333 TGHIARNCPEGGRDNSNQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 485
T +R P G RDN ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 75 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 486 DC 491
+C
Sbjct: 135 NC 136
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/44 (45%), Positives = 23/44 (52%)
Frame = +3
Query: 300 PDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC 431
P C+NC GH AR+C G N CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNC 136
Score = 47.6 bits (108), Expect = 7e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3
Query: 246 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 356
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 84 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK 233
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 98 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 137
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 50.8 bits (116), Expect = 8e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 186 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 302
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Frame = +3
Query: 333 TGHIARNCPEGGRDNSNQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 485
T +R P G RDN ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 34 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 486 DC 491
+C
Sbjct: 94 NC 95
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/44 (45%), Positives = 23/44 (52%)
Frame = +3
Query: 300 PDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC 431
P C+NC GH AR+C G N CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNC 95
Score = 47.6 bits (108), Expect = 7e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3
Query: 246 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 356
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 84 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK 233
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 57 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 96
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 50.8 bits (116), Expect = 8e-07
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +3
Query: 141 GGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--S 314
GG G+ G CFKC GH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 315 CYNCNKTGHIARNCPEGG 368
CY+C ++GH AR+C GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +3
Query: 249 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRN 428
C++C GH+AREC+Q Y+ G + GG +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 429 CPDG 440
C G
Sbjct: 195 CTSG 198
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQRE------------KCFKCNRTGHFARDC 230
C+KC GH AREC+QGG G G + C+ C +GHFARDC
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/60 (38%), Positives = 30/60 (50%)
Frame = +3
Query: 312 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 491
SC+ C + GH+AR C +GG S SG G +CY CG+ GH +RDC
Sbjct: 137 SCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGG-GGGGGGGGLSCYSCGESGHFARDC 195
Score = 37.5 bits (83), Expect = 0.007
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGG 146
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 33.5 bits (73), Expect = 0.12
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 438 GTKTCYVCGKPGHISRDCDE 497
G +C+ CG+PGH++R+C +
Sbjct: 134 GDNSCFKCGEPGHMARECSQ 153
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Frame = +3
Query: 303 DEPSCYNCNKTGHIARNCPEGGRDNSNQ-TCYNCNKSGHISRNCPDGTKT-------CYV 458
D +CY C K GH AR+C + + TCY C++ GH S CP+ CY
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYW 91
Query: 459 CGKPGH 476
CG H
Sbjct: 92 CGNQDH 97
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Frame = +3
Query: 249 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRDNSNQT--CYNCNKS 410
CY+C GH AR C P +CY C++ GH + CP D N CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 411 GH 416
H
Sbjct: 96 DH 97
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Frame = +3
Query: 372 DNSNQTCYNCNKSGHISRNCPDGTK------TCYVCGKPGHISRDCDEERN*HA-PNNS* 530
D + CY C K GH +R+C T+ TCY C + GH S C +R P
Sbjct: 30 DYDPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHC 89
Query: 531 YFIINKNKQNN 563
Y+ N++ + N
Sbjct: 90 YWCGNQDHRFN 100
Score = 34.3 bits (75), Expect = 0.070
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 272
CYKC + GHFAR C V + C+ C+ GH + C + R + N G
Sbjct: 36 CYKCGKLGHFARSCHV--VTQPTTAY----ITCYFCSEEGHRSNGCPNK--RTDQVNPKG 87
Query: 273 H 275
H
Sbjct: 88 H 88
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 40.3 bits (90), Expect = 0.001
Identities = 36/148 (24%), Positives = 51/148 (34%), Gaps = 11/148 (7%)
Frame = +3
Query: 81 SSSVCYKCNRTGHFARECTQGGVGARDAGFNR-QREKCFKCNRTGHFARDCKEEADRCYR 257
+S Y N T E GG A G + +R C++C GH + C +
Sbjct: 444 NSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIKLQNTSH 503
Query: 258 CNGT-GHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTC------YNCNKSGH 416
N T H E P + + Y+ K N D S T N
Sbjct: 504 TNSTLDHQTVEAG--PTQVTSYSLQKKTRDTENNGGSFMDESYATVPISIDVTNGANDAS 561
Query: 417 ISRNCPDGT---KTCYVCGKPGHISRDC 491
++ G + CY CG+ GH+S C
Sbjct: 562 LTSAVSTGKIKKRNCYECGEKGHLSSAC 589
Score = 32.3 bits (70), Expect = 0.28
Identities = 23/105 (21%), Positives = 38/105 (36%)
Frame = +3
Query: 177 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 356
+R C++C GH + C + + + +E Y K +
Sbjct: 393 KRRVCYECGEKGHLSTACPIKLQKADD-QANSKLGQETVDGRPAMQSYGLPKNSGDSYYM 451
Query: 357 PEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 491
E ++N+T YN S + CY CG+ GH+S C
Sbjct: 452 NETYA-STNET-YNGGYSASAVGTGKVKRRNCYECGEKGHLSTAC 494
Score = 30.7 bits (66), Expect = 0.86
Identities = 28/121 (23%), Positives = 42/121 (34%)
Frame = +3
Query: 72 SKMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRC 251
SK+ VCY+C GH + C A D ++ ++ R + + +
Sbjct: 390 SKVKRRVCYECGEKGHLSTACPIKLQKADDQANSKLGQETVD-GRPAMQSYGLPKNSGDS 448
Query: 252 YRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC 431
Y N T E S TG + R + CY C + GH+S C
Sbjct: 449 YYMNETYASTNETYNGGYSASAVG---TGKVKR-----------RNCYECGEKGHLSTAC 494
Query: 432 P 434
P
Sbjct: 495 P 495
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +3
Query: 387 TCYNCNKSGHISRNCPDGT---KTCYVCGKPGHISRDC 491
TCY+C + HI+ +CP T K+C++C H +R C
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFICASLEHGARQC 181
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 312 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC 431
+CY+C + HI +CP N ++C+ C H +R C
Sbjct: 144 TCYSCGEKDHITVSCPT--LTNCRKSCFICASLEHGARQC 181
Score = 30.7 bits (66), Expect = 0.86
Identities = 19/79 (24%), Positives = 25/79 (31%)
Frame = +3
Query: 255 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCP 434
+ I C + DE N + R E G SN +
Sbjct: 85 KLEAANEIVTHCVERQDED-----NMVEDVVRGEEEDGETTSNSVMTKLLRGARYFDPLD 139
Query: 435 DGTKTCYVCGKPGHISRDC 491
G TCY CG+ HI+ C
Sbjct: 140 AGWVTCYSCGEKDHITVSC 158
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 93 CYKCNRTGHFAREC-TQGGVGARDAGFNRQR 182
CY+C +GHFAREC ++GG G R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 36.3 bits (80), Expect = 0.017
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 141 GGVGARDAGFNRQRE--KCFKCNRTGHFARDCK 233
GG G D G R KC++C +GHFAR+C+
Sbjct: 80 GGRGGGDGGRGRGGSDLKCYECGESGHFARECR 112
Score = 32.7 bits (71), Expect = 0.21
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 366 GRDNSNQTCYNCNKSGHISRNC 431
GR S+ CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 246 RCYRCNGTGHIAREC 290
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 315 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCP 434
CY C ++GH AR C G + + ++S R P
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
Score = 28.3 bits (60), Expect = 4.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 450 CYVCGKPGHISRDC 491
CY CG+ GH +R+C
Sbjct: 98 CYECGESGHFAREC 111
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/23 (65%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +3
Query: 93 CYKCNRTGHFAREC-TQGGVGAR 158
CY+C TGHFAREC +GG G R
Sbjct: 101 CYECGETGHFARECRNRGGTGRR 123
Score = 37.1 bits (82), Expect = 0.010
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 138 QGGVGARDAGFNRQREKCFKCNRTGHFARDCK 233
+GG G G KC++C TGHFAR+C+
Sbjct: 84 RGGGGGGRGGRGGSDLKCYECGETGHFARECR 115
Score = 33.9 bits (74), Expect = 0.092
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 363 GGRDNSNQTCYNCNKSGHISRNC 431
GGR S+ CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 31.1 bits (67), Expect = 0.65
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 246 RCYRCNGTGHIAREC 290
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 315 CYNCNKTGHIARNCPEGG 368
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
Score = 28.3 bits (60), Expect = 4.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 450 CYVCGKPGHISRDC 491
CY CG+ GH +R+C
Sbjct: 101 CYECGETGHFAREC 114
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
Frame = +3
Query: 144 GVGARDAGFNRQREK---------CFKCNRTGHFARDCKEEADR 248
G RD G++R R + CFKC + GHFAR+C E+ R
Sbjct: 96 GDRGRDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSR 139
Score = 34.7 bits (76), Expect = 0.053
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 360 EGGRDNSNQTCYNCNKSGHISRNCPDGTK---TCYVCGKPGHISRDCDEE 500
+GG N ++ R+ P G + C+ CGKPGH +R+C E
Sbjct: 87 QGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSE 136
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDAG 167
C+KC + GHFAREC +RD G
Sbjct: 120 CFKCGKPGHFARECP--SESSRDGG 142
Score = 32.3 bits (70), Expect = 0.28
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +3
Query: 315 CYNCNKTGHIARNCP-EGGRDNSNQ 386
C+ C K GH AR CP E RD +
Sbjct: 120 CFKCGKPGHFARECPSESSRDGGGR 144
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 138 QGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 290
QGG G RD +R R++ + +R+ C++C GH AREC
Sbjct: 87 QGGAG-RDNDGDRGRDRGYDRDRSRPSGG---RGGGDCFKCGKPGHFAREC 133
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 141 GGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD 245
GG +R G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 32.7 bits (71), Expect = 0.21
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 306 EPSCYNCNKTGHIARNCPEGGRD 374
E C+ C + GH AR+CP G D
Sbjct: 114 EDECFKCRRPGHWARDCPSTGDD 136
Score = 31.9 bits (69), Expect = 0.37
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 75 KMSSSVCYKCNRTGHFARECTQGG 146
K + C+KC R GH+AR+C G
Sbjct: 111 KGTEDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.86
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 210 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 308
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 327 NKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 491
NK + + P+ G ++ +Q K G S C+ C +PGH +RDC
Sbjct: 80 NKVISVNKAEPKVGGEDVDQL----KKGGGYSSRGKGTEDECFKCRRPGHWARDC 130
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 141 GGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD 245
GG +R G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 32.7 bits (71), Expect = 0.21
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 306 EPSCYNCNKTGHIARNCPEGGRD 374
E C+ C + GH AR+CP G D
Sbjct: 114 EDECFKCRRPGHWARDCPSTGDD 136
Score = 31.9 bits (69), Expect = 0.37
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 75 KMSSSVCYKCNRTGHFARECTQGG 146
K + C+KC R GH+AR+C G
Sbjct: 111 KGTEDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.86
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 210 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 308
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 327 NKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 491
NK + + P+ G ++ +Q K G S C+ C +PGH +RDC
Sbjct: 80 NKVISVNKAEPKVGGEDVDQL----KKGGGYSSRGKGTEDECFKCRRPGHWARDC 130
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 37.1 bits (82), Expect = 0.010
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +3
Query: 177 QREKCFKCNRTGHFARDC 230
Q+EKCF C +TGHFA DC
Sbjct: 261 QQEKCFVCGQTGHFASDC 278
Score = 31.5 bits (68), Expect = 0.49
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 276 IARECAQSP-DEPSCYNCNKTGHIARNCPEGGRDNSN 383
I RE P + C+ C +TGH A +CP G+ SN
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP--GKSGSN 285
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 432 PDGTKTCYVCGKPGHISRDC 491
P + C+VCG+ GH + DC
Sbjct: 259 PGQQEKCFVCGQTGHFASDC 278
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQGGVGARDA 164
C+ C +TGHFA +C G G+ +A
Sbjct: 265 CFVCGQTGHFASDC-PGKSGSNNA 287
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 138 QGGVGARDAGFNRQRE-KCFKCNRTGHFARDC 230
+G G G R E +CFKC R GH+ARDC
Sbjct: 110 KGSFGGGGGGGGRVGEDECFKCGRVGHWARDC 141
Score = 34.7 bits (76), Expect = 0.053
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 75 KMSSSVCYKCNRTGHFARECTQ--GGVGARDAGFN 173
++ C+KC R GH+AR+C GG G GF+
Sbjct: 122 RVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFS 156
Score = 32.3 bits (70), Expect = 0.28
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 306 EPSCYNCNKTGHIARNCPEGG 368
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 363 GGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 491
GGRD+ + G G C+ CG+ GH +RDC
Sbjct: 99 GGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDC 141
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 135 TQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 290
+ G G RD+G++ + F G + D C++C GH AR+C
Sbjct: 94 SHGSRGGRDSGYSIAGKGSFGGGGGG----GGRVGEDECFKCGRVGHWARDC 141
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 363 GGRDNSNQTCYNCNKSGHISRNCP 434
GGR ++ C+ C + GH +R+CP
Sbjct: 120 GGRVGEDE-CFKCGRVGHWARDCP 142
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 138 QGGVGARDAGFNRQREKCFKCNRTGHFARDCK 233
+GG G R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 35.1 bits (77), Expect = 0.040
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 78 MSSSVCYKCNRTGHFARECTQG 143
+ S CY+C GHFAREC +G
Sbjct: 86 IEDSKCYECGELGHFARECRRG 107
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +3
Query: 195 KCNRTGHFARDCKEEADRCYRCNGTGHIAREC 290
K R G R E +CY C GH AREC
Sbjct: 73 KGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 303 DEPSCYNCNKTGHIARNCPEG 365
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 450 CYVCGKPGHISRDCDEER 503
CY CG+ GH +R+C R
Sbjct: 91 CYECGELGHFARECRRGR 108
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 363 GGRDNSNQTCYNCNKSGHISRNCPDG 440
GG ++S CY C + GH +R C G
Sbjct: 84 GGIEDSK--CYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 138 QGGVGARDAGFNRQREKCFKCNRTGHFARDCK 233
+GG G R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 35.1 bits (77), Expect = 0.040
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 78 MSSSVCYKCNRTGHFARECTQG 143
+ S CY+C GHFAREC +G
Sbjct: 86 IEDSKCYECGELGHFARECRRG 107
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +3
Query: 195 KCNRTGHFARDCKEEADRCYRCNGTGHIAREC 290
K R G R E +CY C GH AREC
Sbjct: 73 KGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 303 DEPSCYNCNKTGHIARNCPEG 365
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 450 CYVCGKPGHISRDCDEER 503
CY CG+ GH +R+C R
Sbjct: 91 CYECGELGHFARECRRGR 108
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 363 GGRDNSNQTCYNCNKSGHISRNCPDG 440
GG ++S CY C + GH +R C G
Sbjct: 84 GGIEDSK--CYECGELGHFARECRRG 107
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 35.1 bits (77), Expect = 0.040
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +3
Query: 189 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 359
CF C + GH RDC E D R + +I+ + C C + H A CP
Sbjct: 604 CFYCGKKGHCLRDCLEVTDTELR-DLVQNISVRNGREEASSLCIRCFQLSHWAATCP 659
Score = 33.9 bits (74), Expect = 0.092
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +3
Query: 168 FNRQREKCFKCNRTGHFARDCKEEADR--CYRCNGTGHIARECAQSPDEPSCYNCNKTGH 341
F R+ E +G A + +EE C+ C GH R+C + D +
Sbjct: 575 FARRLEAMKSIMPSGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTD-------TELRD 627
Query: 342 IARNCP-EGGRDNSNQTCYNCNKSGHISRNCPD 437
+ +N GR+ ++ C C + H + CP+
Sbjct: 628 LVQNISVRNGREEASSLCIRCFQLSHWAATCPN 660
Score = 30.7 bits (66), Expect = 0.86
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 333 TGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKT 449
+G +A N E RD C+ C K GH R+C + T T
Sbjct: 588 SGSLAENAEEEQRD---LICFYCGKKGHCLRDCLEVTDT 623
Score = 30.7 bits (66), Expect = 0.86
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 408 SGHISRNCPDGTKT--CYVCGKPGHISRDCDE 497
SG ++ N + + C+ CGK GH RDC E
Sbjct: 588 SGSLAENAEEEQRDLICFYCGKKGHCLRDCLE 619
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 34.7 bits (76), Expect = 0.053
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 7/89 (7%)
Frame = +3
Query: 234 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRDNSNQTCYNCN 404
E ++C C G G + + EP Y N+ + G +D S+ C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 405 KSGHISRNCPD----GTKTCYVCGKPGHI 479
G + CP G C C G +
Sbjct: 256 GKGKLP--CPTCQSRGLIKCQTCDSTGSL 282
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 420 SRNCPDGTKTCYVCGKPGHISRDC 491
S D K CY C K GH++RDC
Sbjct: 916 SEETDDAVKICYRCKKVGHLARDC 939
Score = 31.1 bits (67), Expect = 0.65
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 357 PEGGRDNSNQTCYNCNKSGHISRNC 431
P D++ + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.86
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 90 VCYKCNRTGHFAREC 134
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.86
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +3
Query: 189 CFKCNRTGHFARDC--KEEAD 245
C++C + GH ARDC KE +D
Sbjct: 926 CYRCKKVGHLARDCHGKETSD 946
Score = 30.3 bits (65), Expect = 1.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 315 CYNCNKTGHIARNC 356
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 249 CYRCNGTGHIAREC 290
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 33.1 bits (72), Expect = 0.16
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 189 CFKCNRTGHFARDCKEEA 242
CFKC R GH++RDC A
Sbjct: 8 CFKCGRPGHWSRDCPSSA 25
Score = 31.9 bits (69), Expect = 0.37
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 450 CYVCGKPGHISRDC 491
C+ CG+PGH SRDC
Sbjct: 8 CFKCGRPGHWSRDC 21
Score = 29.1 bits (62), Expect = 2.6
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 93 CYKCNRTGHFAREC 134
C+KC R GH++R+C
Sbjct: 8 CFKCGRPGHWSRDC 21
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = +3
Query: 315 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRN 428
C+ C + GH +R+CP N + + + I N
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45
Score = 27.9 bits (59), Expect = 6.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 390 CYNCNKSGHISRNCP 434
C+ C + GH SR+CP
Sbjct: 8 CFKCGRPGHWSRDCP 22
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Frame = +3
Query: 366 GRDNSNQTCYNCNKSGHISRNCPDGTKT------CYVCGKPGHISRDC 491
G + C C + GH CP T T C +CG GH + DC
Sbjct: 355 GTIRDEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +3
Query: 303 DEPSCYNCNKTGHIARNCPEGGRD-NSNQTCYNCNKSGHISRNCP 434
DE C C + GH CP S+ C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Frame = +3
Query: 366 GRDNSNQTCYNCNKSGHISRNCPDGTKT------CYVCGKPGHISRDC 491
G + C C + GH CP T T C +CG GH + DC
Sbjct: 355 GTIRDEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +3
Query: 303 DEPSCYNCNKTGHIARNCPEGGRD-NSNQTCYNCNKSGHISRNCP 434
DE C C + GH CP S+ C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 246 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 368
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 32.3 bits (70), Expect = 0.28
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = +3
Query: 255 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC----PEGGRDNSNQTCYNCNKSGHIS 422
R + R+ A +P + C C T H+ +C P ++ CY C GH+S
Sbjct: 268 RATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVS 326
Query: 423 RNCP 434
CP
Sbjct: 327 MYCP 330
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Frame = +3
Query: 180 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 290
+ C C T H DC + +CY C G GH++ C
Sbjct: 284 KRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYC 329
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 31.9 bits (69), Expect = 0.37
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 177 QREKCFKCNRTGHFARDCK 233
Q+E+CF C + GHFA +C+
Sbjct: 260 QQERCFLCGQMGHFASNCE 278
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 276 IARECAQSPDEPS-CYNCNKTGHIARNC 356
I RE +P + C+ C + GH A NC
Sbjct: 250 ILREVVYTPGQQERCFLCGQMGHFASNC 277
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 31.5 bits (68), Expect = 0.49
Identities = 38/157 (24%), Positives = 56/157 (35%), Gaps = 16/157 (10%)
Frame = +3
Query: 84 SSVCYKCNRTGHFARECTQGGVGARD----AGFNRQREKCFKCNRTGH--FARDCKEEAD 245
S+VC C + GH + C +R+ A R E CN G R EA+
Sbjct: 764 SNVCIHCQQRGHASTNCPSRVPASRNSRPTATNPRNDESTVSCNTCGSQCVLRTANTEAN 823
Query: 246 R---CYRC--NGTGHIARECA---QSPDEPSCYNCNKTGHI-ARNCPEGGRDNSNQTCYN 398
R + C G A E + S + + N +G +R GGR +
Sbjct: 824 RGRQFFSCPTQGCSFFAWEDSINNSSGNATTGSNSGGSGRRGSRGRGRGGRGGQSSGGRR 883
Query: 399 CNKSGHISRNC-PDGTKTCYVCGKPGHISRDCDEERN 506
+ + +S P C+ CG P H + C N
Sbjct: 884 GSGTSFVSATGEPVSGIRCFSCGDPSHFANACPNRNN 920
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 336 GHIARNCPEGGRDNSNQTCYNCNKSGHISRNCP 434
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 31.5 bits (68), Expect = 0.49
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +3
Query: 255 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDN 377
R NG G E P C+ CN GH ++CP G N
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNGDPN 230
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 90 VCYKCNRTGHFARECTQGG 146
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 31.5 bits (68), Expect = 0.49
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 447 TCYVCGKPGHISRDCDEER 503
+C++CGK GH + DC ++R
Sbjct: 727 SCFICGKSGHRATDCPDKR 745
Score = 30.7 bits (66), Expect = 0.86
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 369 RDNSNQTCYNCNKSGHISRNCPD 437
R++ +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 312 SCYNCNKTGHIARNCPE 362
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +3
Query: 315 CYNCNKTGHIARNC-------PEGGRDNSNQTCYNCNKSGHISRNCPDG 440
C+NC H+ARNC P+ + + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 30.7 bits (66), Expect = 0.86
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 387 TCYNCNKSGHISRNCPDGTKTCYV 458
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 306 EPSCYNCNKTGHIARNCP 359
E +CY C + GHIA+ CP
Sbjct: 224 ELTCYRCKQEGHIAKICP 241
>At5g48030.1 68418.m05935 DNAJ heat shock protein, mitochondrially
targeted (GFA2) 99.8% identical to mitochondrially
targeted DnaJ protein GFA2 [Arabidopsis thaliana]
GI:21429604; contains Pfam profiles PF00226: DnaJ
domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
central domain (4 repeats)
Length = 456
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = +3
Query: 102 CNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTG--HFARDCKEEADRCYRCNGTG 272
C++T F E G + +REKC CN +G R C +C G G
Sbjct: 226 CSKTVTFQTEMACNTCGGQGVPPGTKREKCKACNGSGMTSLRRGMLSIQTTCQKCGGAG 284
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 234 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 368
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 321 NCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 446
+ +++G + GG S C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGGATTS---CNVCGNSGHVSAKCPGATK 430
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 396 NCNKSGHISRNCPDG--TKTCYVCGKPGHISRDC 491
+ ++SG + G T +C VCG GH+S C
Sbjct: 392 HAHQSGQSGNHYSGGGATTSCNVCGNSGHVSAKC 425
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 1.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 90 VCYKCNRTGHFARECTQGG 146
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +3
Query: 255 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDN 377
R G G E P C+ CN +GH ++C G N
Sbjct: 102 RMGGRG-FGMERTTPPPGYVCHRCNVSGHFIQHCSTNGNPN 141
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 234 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 371
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +3
Query: 186 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 320
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 234 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 371
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +3
Query: 186 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 320
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 378 SNQTCYNCNKSGHISRNCPDGTKT 449
S+ C++C++ GH ++NCP T T
Sbjct: 2 SSGDCFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 2.6
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 315 CYNCNKTGHIARNCP 359
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 78 MSSSVCYKCNRTGHFAREC 134
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 231 KEEADRCYRCNGTGHIARECAQSP 302
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 189 CFKCNRTGHFARDC 230
CFKC T H A+DC
Sbjct: 342 CFKCGSTDHIAKDC 355
Score = 27.5 bits (58), Expect = 8.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 93 CYKCNRTGHFARECTQG 143
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 243 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEG-GRDNSNQTCYNCNKSGH 416
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 417 ISRNC 431
IS+ C
Sbjct: 282 ISKPC 286
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 276 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRN 428
++R+ ++S E +C+ C + GH +CP + + Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 450 CYVCGKPGHISRDCDEERN*HAPNNS*Y 533
C++CG+ GH DC RN P Y
Sbjct: 161 CWICGEDGHYKNDC-PSRNSEKPKEHAY 187
>At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/83 (25%), Positives = 33/83 (39%)
Frame = +3
Query: 135 TQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS 314
+ GG G DA + K F + +DC+EE D+ + + S +PS
Sbjct: 154 SSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCEEEEDKKQKDEQSPTSNANKTNSEKQPS 213
Query: 315 CYNCNKTGHIARNCPEGGRDNSN 383
+ K G+I G NS+
Sbjct: 214 --DSLKDGYIHMRARRGQATNSH 234
>At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/83 (25%), Positives = 33/83 (39%)
Frame = +3
Query: 135 TQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS 314
+ GG G DA + K F + +DC+EE D+ + + S +PS
Sbjct: 154 SSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCEEEEDKKQKDEQSPTSNANKTNSEKQPS 213
Query: 315 CYNCNKTGHIARNCPEGGRDNSN 383
+ K G+I G NS+
Sbjct: 214 --DSLKDGYIHMRARRGQATNSH 234
>At5g26820.1 68418.m03200 ferroportin-related low similarity to
ferroportin1 [Danio rerio] GI:7109245
Length = 598
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/41 (48%), Positives = 21/41 (51%)
Frame = -1
Query: 186 SPAAG*SQRRGRLRHLACTRGRSAPSCCTCSIRLNSFSIRC 64
SP A S R R RS+PSC S RLNSFS RC
Sbjct: 29 SPVAFSSVRYHRFHSCRWLSLRSSPSC---SRRLNSFSSRC 66
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 11/52 (21%)
Frame = +3
Query: 309 PSCYNCNKTGHIARNCPEGGRDNSN-----------QTCYNCNKSGHISRNC 431
P C++C GHI C R+ + CY+ GHI RNC
Sbjct: 626 PVCHHCGVVGHIRPRCFRLLREKNRLMNAYDVRFHGPKCYHYGVQGHIKRNC 677
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 87 SVCYKCNRTGHFARECTQGGVGARD 161
S CY+C GH + EC + +G R+
Sbjct: 152 SRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 4.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 234 EEADRCYRCNGTGHIARECAQS 299
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 4.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 303 DEPSCYNCNKTGHIARNCPE 362
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 396 NCNKSGHISRNCPDGTKTCYVCGKPGHISRDCDEER 503
N S I + CY CG GH+S +C + +
Sbjct: 136 NGRASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQ 171
Score = 27.5 bits (58), Expect = 8.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 390 CYNCNKSGHISRNCP 434
CY C GH+S CP
Sbjct: 154 CYECGDEGHLSYECP 168
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 168 FNRQREKCFKCNRTGHFARDCKEEADR 248
F + KCF C + GH A DC+ + R
Sbjct: 259 FPGEEGKCFLCGQEGHRAADCEGKIKR 285
>At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 415
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Frame = +3
Query: 249 CYRCNGTGHIAREC---AQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNC 401
C+RC GH +C + + D P C G R+N + Y C
Sbjct: 11 CFRCRQAGHWINDCPLKSYTDDPPPAIQCPCGGGFCEIKVANTRENPGRKFYKC 64
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 267 CHYICSNGQPPPCSRAQSARCGC 199
C IC +G+ PPC +C C
Sbjct: 255 CREICHDGECPPCRERAVYKCSC 277
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Frame = +3
Query: 249 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNC 356
C C+ T H EC P D CY C GH++ C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
>At2g33090.1 68415.m04057 expressed protein ; expression supported
by MPSS
Length = 248
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 375 NSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH-ISRD 488
N Y C K+ H++ N P+ K C K H ISRD
Sbjct: 18 NGRGDAYTCKKALHLTLNKPNVVKACSDLKKNEHQISRD 56
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 28.3 bits (60), Expect = 4.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 390 CYNCNKSGHISRNCPD 437
C +CN +GH SR CP+
Sbjct: 5 CSHCNHNGHNSRTCPN 20
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 315 CYNCNKTGHIARNCPEGG 368
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 390 CYNCNKSGHISRNCPD-GTKTCYVCGKPG 473
C +C+ +GH SR CP G TC G G
Sbjct: 5 CSHCSNNGHNSRTCPTRGGGTCGGSGGGG 33
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +3
Query: 231 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKS 410
+E C+ CNGTG AQ C C +G++ G ++ SN C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVELGGGEKEVSN--CINCDGA 127
Query: 411 GHIS 422
G ++
Sbjct: 128 GSLT 131
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 222 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYN 398
RDC+ A RCY G AR C + PS N + I E G ++ ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180
Query: 399 CNKS 410
C S
Sbjct: 181 CKSS 184
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Frame = +3
Query: 108 RTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARD---------CKEEADRCYRC 260
R+ + C + G + + ++E C K + A + C EE +R C
Sbjct: 778 RSNKDKQSCDKKGAKNKTRAEDDKQENCHKLSENNKTASEMLVSGTKVSCHEENNRVMNC 837
Query: 261 NGTGHIARECA 293
NG G +A E A
Sbjct: 838 NGRGSVAGEMA 848
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = +3
Query: 249 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 359
C C+ T H +EC P D C C GH++ CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Frame = +3
Query: 258 CNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 359
C H +C P D CY+C GH++ CP
Sbjct: 339 CGYIDHPTEQCLHPPQAMPYMVDCAKCYSCGGVGHVSMYCP 379
>At5g21140.1 68418.m02524 expressed protein
Length = 312
Score = 27.5 bits (58), Expect = 8.0
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +3
Query: 282 RECAQSPDEPSCYNCNKTGHIARNCP-EGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYV 458
R ++ D PSC CN+ G A CP EG ++ C S K C
Sbjct: 187 RSWFRNNDVPSCEVCNEAGVKADLCPTEGCPVRIHKYCLKKLLSQR-------DDKRCSG 239
Query: 459 CGKPGHISRDCDEERN*HAPNN 524
CGKP +S+ E A N+
Sbjct: 240 CGKPWPLSKITKTEAAEEAMND 261
>At3g57000.1 68416.m06345 nucleolar essential protein-related
contains weak similarity to Nucleolar essential protein
1 (Essential for mitotic growth 1) (Swiss-Prot:Q06287)
[Saccharomyces cerevisiae]
Length = 298
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 339 HIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDCD 494
H+ N G +S++ N K H++ C D T +V G H DC+
Sbjct: 216 HLPVNSHRIGFSHSSEKLVNMQK--HLATVCDDDRDTVFVVGAMAHGKIDCN 265
>At2g06904.1 68415.m00778 hypothetical protein
Length = 217
Score = 27.5 bits (58), Expect = 8.0
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +3
Query: 450 CYVCGKPGHISRDC 491
C++CG+ GH +DC
Sbjct: 177 CFICGEDGHYPQDC 190
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,286,742
Number of Sequences: 28952
Number of extensions: 225901
Number of successful extensions: 1339
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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