Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C19
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23849| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_56637| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-06)                 29   3.1  
SB_47699| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-23)                 29   3.1  
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)               29   4.1  
SB_20893| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-23)                 27   9.6  

>SB_23849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = -3

Query: 364 NFNTSCYLHTGFHYRHPCAFCSVCFNGQTE 275
           N +     H    Y HPC +C  C  G  +
Sbjct: 13  NLSALTNTHQALFYPHPCCYCEACLAGNND 42


>SB_56637| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-06)
          Length = 269

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -1

Query: 312 APSAVCASMAKLS--FSCKALALAMSLFSIASSISRASLGNRLNEVP 178
           AP  +  S AK++  F+C ALA A+S F +      A LG+  N VP
Sbjct: 130 APLKIIVSEAKVARVFACTALAFAISWFPVLYYTIAAVLGS-FNSVP 175


>SB_47699| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-23)
          Length = 335

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -1

Query: 312 APSAVCASMAKLS--FSCKALALAMSLFSIASSISRASLGNRLNEVP 178
           AP  +  S AK++  F+C ALA A+S F +      A LG+  N VP
Sbjct: 196 APLKIIVSEAKVARVFACTALAFAISWFPVLYYTIAAVLGS-FNSVP 241


>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
          Length = 3561

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
 Frame = -1

Query: 420 WIRCFASADIGLCGSDGGPTLI--PVAISIPAFIIGTHAPSAVCASMAKLSFSCKALALA 247
           W+   AS+++ L  S G   L+  P+ ++  +  + T++   +  +     FS   L + 
Sbjct: 195 WMLDLASSNLSL--SSGAKILVSCPINLTANSLTMQTNSQFNIFGNGKVSHFSLNNLDID 252

Query: 246 MSLFSIASSISRASLGNRLNEVPILDFMPRSAAGANSVSAPRNIS 112
             L   A S+    L   + +  +LDF P    GAN+++     S
Sbjct: 253 GILRPAALSVGIGILSVNIRQHGVLDFAPYGPFGANALNVEGTFS 297


>SB_20893| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-23)
          Length = 435

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 490 SVKCNVMDVGGKEYGRGVSGWFL*R*SGKEMVSGHRSICTPAISE 624
           +VK  + D  G   G GV G F+ R SG+    GH S  +PA  +
Sbjct: 282 TVKMTMSDRSGSGGGSGV-GRFVRRWSGRSSTRGHSSSESPAAKD 325


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,787,823
Number of Sequences: 59808
Number of extensions: 416853
Number of successful extensions: 1059
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)