Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C19
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.61 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.61 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.9  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -3

Query: 319 HPCAFCSVCFNGQTEFLL*SSCFSNVIVFYSIKYISSE 206
           +PC +  +C+   T  +       N+I F  +KY++ E
Sbjct: 486 YPCCWWKICWTITTPAICVGVFTFNIIKFVPVKYLTYE 523


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -3

Query: 319 HPCAFCSVCFNGQTEFLL*SSCFSNVIVFYSIKYISSE 206
           +PC +  +C+   T  +       N+I F  +KY++ E
Sbjct: 539 YPCCWWKICWTITTPAICVGVFTFNIIKFVPVKYLTYE 576


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 209 ARDILDAI-ENNDIAKARALQEKLSLAIEAHTAEG 310
           A D+L    +NN+I  A+ L +    ++  HT  G
Sbjct: 407 ANDLLTTEKDNNEIVTAQFLNQLKKSSVLVHTKNG 441


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 547  QTPLVHTPSPRRPLRYT*P 491
            Q P++  PSP +  RYT P
Sbjct: 982  QQPIMTDPSPFKRGRYTPP 1000


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,637
Number of Sequences: 438
Number of extensions: 3555
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)