Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C18
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             209   1e-54
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)       117   1e-26
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        52   3e-07
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          44   8e-05
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)               34   0.12 
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  209 bits (511), Expect = 1e-54
 Identities = 98/161 (60%), Positives = 118/161 (73%)
 Frame = +1

Query: 166 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 345
           L EKR +NF IG DIQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ 
Sbjct: 31  LIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQ 90

Query: 346 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 525
           +   LFK+L KYRPET                   +E P K+P  ++ G N +T LVE K
Sbjct: 91  STVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENK 150

Query: 526 KAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG*SRLG 648
           KAQLVVIAHDVDPIE+V++LPALCRKM VPYCIVKG +RLG
Sbjct: 151 KAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLG 191


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score =  117 bits (281), Expect = 1e-26
 Identities = 56/97 (57%), Positives = 66/97 (68%)
 Frame = +1

Query: 358 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKAQL 537
           LFK+L KYRPET                   +E P K+P  ++ G N +T LVE KKAQL
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63

Query: 538 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKG*SRLG 648
           VVIAHDVDPIE+V++LPALCRKM VPYCIVKG +RLG
Sbjct: 64  VVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLG 100


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 23/56 (41%), Positives = 34/56 (60%)
 Frame = +1

Query: 481 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG*SRLG 648
           LR G N  TK + +  A+ +V+A D +P+E++L LP LC    VPY  V+  + LG
Sbjct: 94  LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALG 149


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +1

Query: 469 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 627
           +  TLR G   V K + K +   V++A DV PI+++  +P +C    +PY  V
Sbjct: 95  KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYV 147


>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +1

Query: 481 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG*SRLG 648
           L  G +   K ++K++A L +++++ D    V  + ALC + G+P   V    +LG
Sbjct: 38  LSRGLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLG 93


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 34/115 (29%), Positives = 47/115 (40%)
 Frame = +3

Query: 96   DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 275
            DR+KS+GR++      A +  K S R E++ +   P      R     A  E  SH  S 
Sbjct: 978  DRQKSNGRNSRSVSPSAVKRTKGSKRSESRSVSRSPERDRKGRD---SAKKERQSHSESP 1034

Query: 276  GCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEIQARN*GSQERASKESRRSQG 440
              VT SS+     +P H   R      S       Q R   S  R  ++ RRS+G
Sbjct: 1035 QRVTKSSKERPRKRPRHQS-RERRPSSSPPRRSRPQ-RTSPSPRRTPEDRRRSRG 1087


>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +3

Query: 102 EKSSGRSTCGEES*AQEDCKPSIREENKELCY 197
           EK  G  TCG+ES    DC P  +E   E CY
Sbjct: 94  EKKEGCYTCGDESHIARDC-PEKKESPGESCY 124


>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 229 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 378
           SR  RW  Y R+   KA+LQR  ++   I Q T  + K        +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,107,322
Number of Sequences: 59808
Number of extensions: 359453
Number of successful extensions: 865
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)