Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_C18
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 190 9e-49
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 190 9e-49
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 45 4e-05
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 45 4e-05
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 45 5e-05
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 44 9e-05
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 39 0.003
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 35 0.054
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 35 0.054
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 34 0.094
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 34 0.094
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 34 0.094
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 190 bits (462), Expect = 9e-49
Identities = 94/162 (58%), Positives = 113/162 (69%)
Frame = +1
Query: 166 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 345
LFE+R K F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK
Sbjct: 22 LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 81
Query: 346 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 525
A LFKIL KYRPE K+P ++ G N VT L+E+
Sbjct: 82 LATSLFKILLKYRPE-DKAAKKERLLNKAQAEAEGKPAESKKPIVVKYGLNHVTYLIEQN 140
Query: 526 KAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG*SRLGA 651
KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKG SRLGA
Sbjct: 141 KAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGA 182
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 190 bits (462), Expect = 9e-49
Identities = 93/162 (57%), Positives = 113/162 (69%)
Frame = +1
Query: 166 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 345
LFE+R K F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK
Sbjct: 23 LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 82
Query: 346 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 525
A LFK+L KYRPE K+P ++ G N VT L+E+
Sbjct: 83 LATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPS-ESKKPIVVKYGLNHVTYLIEQN 141
Query: 526 KAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG*SRLGA 651
KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKG SRLGA
Sbjct: 142 KAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGA 183
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +1
Query: 481 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG*SRLG 648
L+ G N TK + + ++ VV+A D +P+E++L LP L VPY V LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +1
Query: 481 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG*SRLG 648
L+ G N TK + + ++ VV+A D +P+E++L LP L VPY V LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +1
Query: 481 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG*SRLG 648
L+ G N TK + + ++ +V+A D +P+E++L LP L VPY V LG
Sbjct: 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +1
Query: 481 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 627
L+ G V K + + + L VIA ++ PI+++ LP LC + GVPY V
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYV 99
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +1
Query: 499 TVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG*SRLG 648
+ TK + + ++ VV+A D +P+E++L LP L VPY V LG
Sbjct: 73 SATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 122
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 34.7 bits (76), Expect = 0.054
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +1
Query: 490 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG*SRLG 648
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 34.7 bits (76), Expect = 0.054
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +1
Query: 490 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG*SRLG 648
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 33.9 bits (74), Expect = 0.094
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 490 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG*SRLG 648
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 33.9 bits (74), Expect = 0.094
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 490 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG*SRLG 648
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 33.9 bits (74), Expect = 0.094
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 490 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKG*SRLG 648
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,335,953
Number of Sequences: 28952
Number of extensions: 251753
Number of successful extensions: 674
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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