Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C17
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    29   0.72 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    28   1.3  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    27   1.7  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    26   5.1  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   5.1  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    26   5.1  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   5.1  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   6.7  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.7  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   8.8  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   8.8  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    25   8.8  

>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 71  ILQLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFI 178
           ++ L+ A  L +  YQ        S  +WTLYL F+
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +2

Query: 407  LSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLG 517
            LSI+ AK  TI  +  +  + S++L T+W+ +LNS+G
Sbjct: 3546 LSISSAKLSTICRSVLKASVNSALL-TSWICFLNSIG 3581


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +1

Query: 136 PQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF 285
           P  F ++D L  +YR+K +D   HD K+    ++ EE+ Y+ ++ + + F
Sbjct: 116 PSQFSSID-LSWVYRSKEEDDDFHDPKSSVVSLMGEED-YLGWSRFCDLF 163


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 148 VNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEEQRLTY 318
           +NMD LL  Y TK  D      + +NY ++     Y  + N  ++F+   +++RL +
Sbjct: 289 MNMDILLDSYLTKAMDIHATFIQKLNYDLI--NLLYEPFHNIYSSFIKPIDDRRLEF 343


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 493 GSIPEFSWYSPIKTGYYPLMTSYYFPFAQRP 585
           G  P+  +Y P +  YYP   +Y  P   +P
Sbjct: 107 GGYPQQPYYYPNQPNYYPAQPAYAQPVYAQP 137


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 157 DTLLKIYRTKMQDG-ILHDAKAINYGIVKEEEQYVYYANYS 276
           D  + I R K   G + HD   +NY ++   E++ +  N S
Sbjct: 83  DNFVNIIRRKSGGGTVFHDFGNLNYSVLMNREEFSHTENAS 123


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -2

Query: 294 IVKESVGIVG-VIHI-LLFLFYNSIINSLCIVKN 199
           + KE   I+  +++I ++FLF N +++ +C VKN
Sbjct: 22  VAKEKYKIIHRLLYISIIFLFLNYVVDIVCYVKN 55


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -2

Query: 246 FLFYNSIIN-SLCIVKNTVLHFSAINLK*SVHINEE 142
           FLF N   N SLC  ++T   F  +    S+HI  E
Sbjct: 699 FLFSNGSCNTSLCYYESTDPDFGGLKTPMSIHIERE 734


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = +1

Query: 436 NFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHS 606
           NFY  +    YF   T G+ S+P F   +      YP   S Y P    P   ++ S
Sbjct: 126 NFYPPIQNSTYFINATGGIDSMPYFG-LNNAPGNIYPF--SMYKPLEADPQYLSVPS 179


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = +1

Query: 367 HLPFWWSSERYGNLKHRRGEI-YYNFYQQLTTRYYFERLTNGLGSIPEFSWYSP 525
           H  FWWS  +  NL     E+   NF   L     FE   N +    EFS  SP
Sbjct: 118 HQKFWWSLRKKRNLPKENSELDLSNFQDDLD----FE---NSISQKNEFSQKSP 164


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 43  NEGQFL-YAYYIAVIQRNDTHG 105
           N G FL YA++  VI+  D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = -2

Query: 585 RPLSEWEIV*SHQGIVTSLNR-----RVPREFRYGTQAVCKTLEVITC 457
           RP +  ++V SH+ I+++L +     RVP    YG     KT  ++ C
Sbjct: 30  RPANLEDVV-SHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILAC 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,335
Number of Sequences: 5004
Number of extensions: 55186
Number of successful extensions: 162
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)