Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C16
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0673 - 5491694-5493102,5493386-5493995                           34   0.11 
02_05_0025 - 25165438-25165708,25165807-25166048,25166191-251662...    33   0.26 
05_01_0479 - 3920992-3921513,3921643-3921756,3921905-3922482,392...    29   3.3  
04_01_0014 - 231228-233179,233522-233714                               29   4.3  
04_04_0996 + 29990255-29990425,29990797-29990841,29991024-299910...    28   7.5  

>11_01_0673 - 5491694-5493102,5493386-5493995
          Length = 672

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
 Frame = +3

Query: 324 EQQCEIVSAAKGN*HKDLNL-GLAASCIIKFPRNL--NLANPYMFDFLIIITKGS----L 482
           EQ C+ + +      +D  L   +A CI   P +   N ++  MF  +  +T  +    L
Sbjct: 257 EQFCDCMESFSQKSPQDWKLKDRSAGCIRNTPLDCPSNRSSTDMFQTIARVTLPANPEKL 316

Query: 483 QDLCTCVLCAGVCMECCACNAQCMXRVTVSRWRRRLESPQL 605
           +D  T   CA VC+  C+CNA        S W   L + +L
Sbjct: 317 EDATTQSKCAEVCLSNCSCNAYAYKDSVCSVWHSELLNVKL 357


>02_05_0025 -
           25165438-25165708,25165807-25166048,25166191-25166222,
           25167174-25167231,25167331-25167438
          Length = 236

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 515 SVYGVLCV*CSMHGTCHCIALAATSRIS-PVGE-CGPSWVDFY 637
           SVY + C+   MH + H I  +   R++ P+GE C   W D++
Sbjct: 70  SVYRLSCIKAEMHRSSHLILRSVLGRLNPPIGEVCSRVWFDWF 112


>05_01_0479 -
           3920992-3921513,3921643-3921756,3921905-3922482,
           3922709-3923067,3923132-3923205
          Length = 548

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 477 SLQDLCTCVLCAGVCMECCACNAQCMXRVTVSRWRRRLESPQLGN 611
           S+ +  T   CA  C+  C+CNA    R   S W   L S  + +
Sbjct: 249 SVDNATTQSKCAQACLSYCSCNAYSYERSRCSIWHGDLLSVNMND 293


>04_01_0014 - 231228-233179,233522-233714
          Length = 714

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +3

Query: 477 SLQDLCTCVLCAGVCMECCACNAQCMXRVTVSRWRRRLES 596
           S+QD  T   CA  C+  C+C A        S W   L S
Sbjct: 284 SIQDATTQSKCAQACLSSCSCTAYSYQNNICSVWHGDLFS 323


>04_04_0996 +
           29990255-29990425,29990797-29990841,29991024-29991098,
           29991481-29991691,29992057-29992442,29993202-29993425,
           29993529-29993664,29993699-29993761,29993842-29994021
          Length = 496

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 468 TKGSLQDLCTCVLCAGVCMECCACNAQC 551
           T  S+ DL  C  C   C+E    NAQC
Sbjct: 237 TLDSMSDLAYCPRCGAACLEDEENNAQC 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,345,750
Number of Sequences: 37544
Number of extensions: 282126
Number of successful extensions: 535
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)