Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_C16
(656 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 32 0.36
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011) 31 0.83
SB_56178| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_18661| Best HMM Match : Keratin_B2 (HMM E-Value=0.66) 30 1.9
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74) 29 3.3
SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_25292| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0) 29 4.4
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 32.3 bits (70), Expect = 0.36
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +1
Query: 469 QKVPYRTYVPACYVQECVWSVVRVMLNAWXVSLYRAGGDV*NLPSWGMRPVLGG 630
Q VPY Y + + V+ V+ V +N W VS++ G+ N+P W ++PV+ G
Sbjct: 566 QSVPYHIYPFLFPLNKIVYLVLFVAVNIWTVSIH--DGNY-NVP-WFLQPVING 615
>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
Length = 734
Score = 31.1 bits (67), Expect = 0.83
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -1
Query: 554 HALSITRTTLHTHSCT*HA 498
HALS TRT +HTHS + HA
Sbjct: 370 HALSFTRTIIHTHSHSHHA 388
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -1
Query: 554 HALSITRTTLHTHS 513
HALS TRT +HTHS
Sbjct: 236 HALSFTRTIIHTHS 249
>SB_56178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +3
Query: 492 CTCVLCAGVCMECCACNAQCMXRVTVSRWRRRLESPQ 602
C CV+ C + C CN+ C R R + + + Q
Sbjct: 390 CLCVMTQNFCEKFCQCNSDCQNRFPGCRCKAQCNTKQ 426
>SB_18661| Best HMM Match : Keratin_B2 (HMM E-Value=0.66)
Length = 184
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 538 HAQHSIHTPAHNTQVHRSCKEP 473
HAQH TP HNT C P
Sbjct: 44 HAQHPCTTPMHNTHAQHPCTTP 65
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 538 HAQHSIHTPAHNTQVHRSCKEP 473
HAQH TP HNT C P
Sbjct: 96 HAQHPCTTPMHNTHAQHPCTTP 117
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 538 HAQHSIHTPAHNTQVHRSCKEP 473
HAQH TP HNT C P
Sbjct: 109 HAQHPCTTPVHNTYAQHPCTTP 130
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 538 HAQHSIHTPAHNTQVHRSCKEP 473
HAQH TP HNT C P
Sbjct: 135 HAQHPCTTPVHNTYAQHPCTTP 156
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 538 HAQHSIHTPAHNTQVHRSCKEP 473
HAQH TP HNT C P
Sbjct: 31 HAQHLCTTPMHNTHAQHPCTTP 52
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 538 HAQHSIHTPAHNTQVHRSCKEP 473
HAQH TP HNT C P
Sbjct: 57 HAQHPCTTPMHNTYAQHPCTTP 78
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 538 HAQHSIHTPAHNTQVHRSCKEP 473
HAQH TP HN+ C P
Sbjct: 83 HAQHPCTTPTHNSHAQHPCTTP 104
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 538 HAQHSIHTPAHNTQVHRSCKEPFVII 461
+AQH TP HNT C P +I
Sbjct: 148 YAQHPCTTPMHNTYAQHPCTTPNALI 173
>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
Length = 328
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 486 DLCTCVLCAGVCMECCACNAQCM 554
+LC CV C CC C+ C+
Sbjct: 223 NLCCCVTCRCSVCTCCPCDCTCL 245
>SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 486 DLCTCVLCAGVCMECCACNAQCM 554
+LC CV C CC C+ C+
Sbjct: 223 NLCCCVTCRCSVCTCCPCDCPCL 245
>SB_25292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 381 LGLAASCIIKFPRNLNLANPYMFDFLII-ITKGSLQDLCTCVLCAGVCMECCACNAQ 548
LG+A + ++ +L+ +NP +I I ++ D+C +L A C+ CN++
Sbjct: 27 LGVAPNWVLARWAHLSWSNPDQHWIIITYILLTAIADICRYILVAAACITVLLCNSR 83
>SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 381 LGLAASCIIKFPRNLNLANPYMFDFLII-ITKGSLQDLCTCVLCAGVCMECCACNAQ 548
LG+A + ++ +L+ +NP +I I ++ D+C +L A C+ CN++
Sbjct: 1119 LGVAPNWVLARWAHLSWSNPDQHWIIITYILLTAIADICRYILVAAACITVLLCNSR 1175
>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1571
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -3
Query: 609 SPTGEILDVAASAIQ*HV--PCIEHYTHNTPYTLLHITRRYI 490
+PTG AS + V PC H+ HN T H+T + +
Sbjct: 839 NPTGTTTPSLASEVIAAVQWPCSRHFRHNLALTTSHVTTKLL 880
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,272,835
Number of Sequences: 59808
Number of extensions: 348570
Number of successful extensions: 807
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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