Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C16
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11650.1 68416.m01428 harpin-induced family protein / HIN1 fa...    30   1.6  
At2g33290.1 68415.m04080 SET domain-containing protein (SUVH2) i...    29   3.6  
At1g05590.1 68414.m00579 glycosyl hydrolase family 20 protein si...    27   8.3  

>At3g11650.1 68416.m01428 harpin-induced family protein / HIN1
           family protein / harpin-responsive family protein /
           NDR1/HIN1-like protein 2 identical to NDR1/HIN1-Like
           protein 2 (GP:9502174) [Arabidopsis thaliana]; similar
           to hin1 GB:CAA68848 [Nicotiana tabacum]
          Length = 240

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 492 CTCVLCAGVCMECCAC 539
           C C  C G C+ CC C
Sbjct: 34  CCCFSCLGSCLRCCGC 49


>At2g33290.1 68415.m04080 SET domain-containing protein (SUVH2)
           identical to SUVH2 [Arabidopsis thaliana] GI:13517745;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH2 (SUVH2)  GI:13517744
          Length = 651

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 519 CMECCACNAQCMXRVTVSRWRRRLE 593
           C E C C   C  RVT    R RLE
Sbjct: 474 CGEFCTCGPSCKSRVTQKGLRNRLE 498


>At1g05590.1 68414.m00579 glycosyl hydrolase family 20 protein
           similar to beta-hexosaminidase precursor SP:P43077 from
           [Candida albicans]
          Length = 580

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 514 ECVWSVVRVMLNAWXVSLYRAGGDV*NLPSWGMRPVLGGFLSS 642
           E V +V++ ++N +  S +  GGD      W   P +  FLSS
Sbjct: 313 EVVKNVIQDIVNQFPESFFHGGGDEVIPGCWKTDPAINSFLSS 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,504,236
Number of Sequences: 28952
Number of extensions: 231647
Number of successful extensions: 432
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)