Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C14
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    54   2e-08
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    28   0.79 
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    27   1.4  
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi...    27   1.4  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   3.2  
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    25   9.7  

>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
 Frame = +3

Query: 75  PDVKEFN-ATGAVFVDG--TFEEIDDVIYCTGFQYDYPF-----LDETSELLLTPHSVVP 230
           P++ +F+  T  +++ G      ID VIYCTG+ Y  PF     L      L+   S V 
Sbjct: 258 PEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVH 317

Query: 231 -LYNYMINIHQPTMIIMGLVVRACLVVALDAQARYATAVIKGNFTLPSQDEMMQEWQ 398
            +Y ++  I  PT+  +GL +         AQA +   V  G   LPS++E + +WQ
Sbjct: 318 NVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQL-KWQ 373


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +3

Query: 42  RTPFPPNYINKPDVKEFNATGAVFVDGTFEEIDDVIYCTGFQYDYPFLDETSELLLTPHS 221
           + P  P  + +PD+ + +        G  +E+D +  C G   D   L +  E LL+   
Sbjct: 219 QNPNLPKLLERPDINDLH-------QGILQELDSLCNCLGSSLDVKKLSKQRETLLSHMQ 271

Query: 222 VVPLY 236
           V P +
Sbjct: 272 VNPAF 276


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 111 FVDGTFEEIDDVIYCTGFQYDYPFLDETSELLLTPHSVVPLYNY-MINIHQPTMIIMGLV 287
           FV+   + I+D+   TG     PF +E  +L+L   +   L N+ M  I     I+ GL+
Sbjct: 54  FVEVKEDFIEDLFNLTGLNLAVPFYNEALDLILDRTAPDTLENFDMDVIETSAQILYGLI 113


>SPAP27G11.02 |||TPR repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = +3

Query: 210 TPHSVVPLYNYMINIHQPTMIIMGLVVRACLVVALDAQARYATAVIKGNFTLPSQDEMMQ 389
           TP   VPLY+  +N+        GL++   L  +L AQ    T   K + TL  Q    Q
Sbjct: 209 TPSYAVPLYHEALNLTMANPSCHGLILMNNLATSLLAQTE--TVDKKHHETLMKQS---Q 263

Query: 390 EWQKRA 407
            W ++A
Sbjct: 264 SWSQKA 269


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +3

Query: 345 IKGNFTLPSQDEMMQEWQKRADALRSKGLSMSHIHMLAEKEDEYYEVLSQESRIDRV 515
           +K N  L + + ++++ Q+  + +R + L++   H L   E   YE LSQ    +R+
Sbjct: 494 LKFNILLTTYEYILKDKQE-LNNIRWQYLAIDEAHRLKNSESSLYETLSQFRTANRL 549


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 465 EDEYYEVLSQESRIDRVRRSC 527
           E +Y  VL +ESRI R  R C
Sbjct: 140 ESQYDNVLEEESRIKRNARFC 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,360
Number of Sequences: 5004
Number of extensions: 46884
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)