Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C14
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37338| Best HMM Match : FMO-like (HMM E-Value=2.1e-21)             107   8e-24
SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)                    62   2e-10
SB_3584| Best HMM Match : No HMM Matches (HMM E-Value=.)               62   4e-10
SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   9e-06
SB_54769| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_55817| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_43623| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_11713| Best HMM Match : F5_F8_type_C (HMM E-Value=5e-13)            27   7.6  

>SB_37338| Best HMM Match : FMO-like (HMM E-Value=2.1e-21)
          Length = 433

 Score =  107 bits (256), Expect = 8e-24
 Identities = 49/169 (28%), Positives = 91/169 (53%), Gaps = 1/169 (0%)
 Frame = +3

Query: 12  VHSHHSKVNFRTPFPPNYINKPDVKEFNATG-AVFVDGTFEEIDDVIYCTGFQYDYPFLD 188
           ++  H++    +  P N      +KE  + G AVF DG   ++D +++CTG+ + +PFLD
Sbjct: 218 IYLSHNRPRIPSKMPGNLEQHYGIKELTSDGKAVFKDGQERKVDALMFCTGYDFVFPFLD 277

Query: 189 ETSELLLTPHSVVPLYNYMINIHQPTMIIMGLVVRACLVVALDAQARYATAVIKGNFTLP 368
               + +T + + PLY +M NI  PTM  +GL ++ C       Q+ Y  +++ G   LP
Sbjct: 278 SKCGIKVTDNHITPLYQHMFNIKYPTMSFIGLPIKVCPFPQFHLQSEYIISMLTGKVKLP 337

Query: 369 SQDEMMQEWQKRADALRSKGLSMSHIHMLAEKEDEYYEVLSQESRIDRV 515
           S +EM Q  +K  + + S+G++  + H L  K+  Y + ++  ++  R+
Sbjct: 338 SAEEMHQSAEKEYNEVISEGMAEKYAHFLGPKQWSYNDKIADSAQCSRL 386


>SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)
          Length = 475

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
 Frame = +3

Query: 72  KPDVKEFNATGAVFVDGTFEE-IDDVIYCTGFQYDYPFLDETSELLLTPHSVVPLYNYMI 248
           KP+V  F  TG  F DGT ++ +D VI+CTG+   +  +D++  +L    + V LY Y+ 
Sbjct: 293 KPNVSTFTETGVEFEDGTGDDAVDVVIFCTGYSIGFNCIDQS--ILPVCENDVTLYKYVF 350

Query: 249 NIH--QPTMIIMG-LVVRACLVVALDAQARYATAVIKGNFTLPSQDEMMQEWQKR 404
             H  +PT+ ++G       +   +D Q+R+   V KG   LP ++ MM++  K+
Sbjct: 351 PPHLSKPTLAVLGCFQPLGAINPVVDLQSRWVVQVFKGMKHLPPKEIMMEDIMKK 405


>SB_3584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 470

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
 Frame = +3

Query: 66  INKPDVKEFNATGAVFVDGT-FEEIDDVIYCTGFQYDYPFLDETSELLLTPHSVVPLYNY 242
           I K D+K    +  +F D T  ++ID VI+ TGF   YPFL  ++  L      +PLY +
Sbjct: 277 IVKSDIKSIKGSSILFSDDTTLDDIDIVIFATGFNVRYPFL--SNSWLQPKEDYIPLYKF 334

Query: 243 MINIH--QPTMIIMGLVV-RACLVVALDAQARYATAVIKGNFTLPSQDEMMQE 392
           +      +PT+ I+G       +    + QAR+   V KGN  LP + +M++E
Sbjct: 335 VFPFEPSKPTIAIIGAFTNEGPIPPCCEMQARWVVQVFKGNARLPDKQKMIKE 387


>SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
 Frame = +3

Query: 60  NYINKPDVKEFNATGAVFVDGTFEEIDDVIYCTGFQYDYPFL--DETSELLLTPHSVVPL 233
           N I KP++  F     VF DG+  + D V+ CTG+  + PFL  D  S ++    +   L
Sbjct: 296 NIIIKPNISRFEENKVVFTDGSKVDADVVVCCTGYTINLPFLSDDVKSTVVEEGTNKTKL 355

Query: 234 YNYMINIH-QPTMIIMGLVVRAC--LVVALDAQARYATAVIKGNFTLPSQDEMMQEWQK 401
           +  + +    P++  +G    A   L+   + QAR+ + + KG   LP   ++MQE  K
Sbjct: 356 FKNVFSPQLGPSIAFIGFSQPASGGLLPMSEIQARWFSELCKGTVKLPDA-KIMQEIMK 413


>SB_54769| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -1

Query: 347 YYSRSVSRLCIQCYH*TSANHQSHNDHCRLVDVYHIVV*RHNTMRGK*QFACFV*EWIVV 168
           +++R  +R+C+     T   H     H RLV +   +  +H T R    +AC V     +
Sbjct: 78  FHTRVSTRVCVYTRVRT---HVRVRFHTRLVPLLQTITNKHTTSRSLANYACAVKATCYI 134

Query: 167 LETCT-VDNIVD 135
           +  CT   NI+D
Sbjct: 135 ICKCTRFPNIID 146


>SB_55817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 980

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 480 RNIRPLSLLTCVCVTLIAPWILTRQPVSAIPASFRLETAK*SYLLLQ 340
           RNI       C C+    P + TR P+  +PAS   E     +L L+
Sbjct: 251 RNIEHYVTKVCSCLKSRKPTLKTRSPMQNMPASSPFERISIDFLHLE 297


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +3

Query: 327 RYATAVIKGNFTLPSQDEMMQEWQKRADALRSKGLSMSHIHMLAEKEDEYYEVLSQESRI 506
           RY   +   N +L +  + M +       LR  G+  S ++ L E  D   ++LSQ    
Sbjct: 363 RYDGEIAVDNISLVNSSDCMTK--PDTARLRMAGIQSSIVNHLPESRDRLEQMLSQAGFG 420

Query: 507 DRVRRSCFK 533
            R  R+C++
Sbjct: 421 RRYWRTCYR 429


>SB_43623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 475

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 30  KVNFRTPFPPNYINKPDVKEFN 95
           K+++RTPF P  I   ++K FN
Sbjct: 73  KIDYRTPFKPKIIEIRNMKRFN 94


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 349  KVTSLCRLKTK*CRNGRNGLTR*DPRGYQC 438
            + T++C LK   C+NG   L+   P+GY+C
Sbjct: 1944 RCTNVCDLKP--CQNGNCELSSATPKGYKC 1971


>SB_11713| Best HMM Match : F5_F8_type_C (HMM E-Value=5e-13)
          Length = 516

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +3

Query: 327 RYATAVIKGNFTLPSQDEMMQEWQKRADALRSKGLSMSHIHMLAEKEDEYYEVLSQESRI 506
           RY   +   N +L +  + M +       LR  G+  S ++ L E  D   ++LSQ    
Sbjct: 233 RYDGEIAVDNISLVNSSDCMTK--PDTARLRMAGIQSSIVNHLPESRDRLEQMLSQAGFG 290

Query: 507 DRVRRSCFK 533
            R  R+C++
Sbjct: 291 RRYWRACYR 299


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,287,013
Number of Sequences: 59808
Number of extensions: 364872
Number of successful extensions: 952
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)