Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_C13
(630 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 29 0.73
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb... 28 1.3
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 27 2.2
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 26 3.9
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|... 25 6.8
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 25 9.0
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 9.0
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c... 25 9.0
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom... 25 9.0
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 28.7 bits (61), Expect = 0.73
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = +1
Query: 124 SGLNKTNTAFAFSSMN-----TSVSTIKSTMIEVPPNAESCKQGTY 246
SG+N TN+ + S MN TS+S + T A SCK Y
Sbjct: 78 SGMNMTNSTTSMSGMNMSNSTTSMSGMNMTNTTTTAKASSCKLSMY 123
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 115 SSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAESCKQGTYLDNT 258
+S SG+N TN+ S MN + ST + + + N+ + G + NT
Sbjct: 63 TSMSGMNMTNSTTPMSGMNMTNSTTSMSGMNM-SNSTTSMSGMNMTNT 109
>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 27.9 bits (59), Expect = 1.3
Identities = 9/41 (21%), Positives = 26/41 (63%)
Frame = +1
Query: 130 LNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAESCKQGTYLD 252
L+ + ++A ++++ S++ S++I+ +SC + TY++
Sbjct: 269 LDPSYQSYAAKTIHSDTSSLASSIIQTGDGTQSCDESTYIE 309
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 27.1 bits (57), Expect = 2.2
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +1
Query: 94 KDFKETFSSDSGLNKTNTAFAFSSMNTSV--STIKSTMIEVPPNAESCKQGTYLDNTG 261
K FKE + S K NT A + + S IKS +E P +A + K +DN G
Sbjct: 540 KSFKEVYGKFSA-EKQNTDLAEDAKISEKLDSIIKSKELETPTSATTSKLMAPMDNIG 596
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 26.2 bits (55), Expect = 3.9
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +1
Query: 13 IVFNLFICAYTAPFSVQDILDVFGSPIKDFKETFSSDSGL-NKTNTAF-AFSSMNTSVST 186
IV L +CA APF++ + D+F +K SGL N+ +T + + S+S
Sbjct: 75 IVELLRLCAPDAPFTLSQLEDIFQVILKIL-------SGLMNQESTYYPQIYEILESLSN 127
Query: 187 IKSTMIEVP-PNAE 225
+KS ++ V PNAE
Sbjct: 128 VKSAVLIVDLPNAE 141
>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 290
Score = 25.4 bits (53), Expect = 6.8
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Frame = -1
Query: 333 FYLINFYFL--TFIFLLCLLPWYPAYSCVIQVCTLLA----TLRIRWYFNHSTLNCTN 178
F +IN + L TFI + W+ AYS I++ + L + + + +LNC N
Sbjct: 198 FQMINGFILIVTFICVRIAWGWFSAYSTAIEILNHINVAPWALSLFYLAANMSLNCLN 255
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -2
Query: 200 IVLLIVLTD--VFIELNANAVLVLFNPLSDENVSLKSF 93
+++L+ +TD +FI + NA+LVLF + E L F
Sbjct: 105 LLVLVRMTDYWIFINILHNALLVLFPHVDTERRGLYRF 142
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 619 GSRSXLSKPPTLPLTKSQK 563
GSR+ + KP TLPL +Q+
Sbjct: 71 GSRARIEKPSTLPLELTQE 89
>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 277 MVSCILLCYPSMYLA 233
+ SCIL C P +YLA
Sbjct: 30 IASCILFCCPGIYLA 44
>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 444 RRHYL-RISLHDIISEVDRTSQFIKMKVFLILCCSLSLTIN 563
R+HY +I LH +++ SQF KV S S+ IN
Sbjct: 228 RKHYPPKICLHSYSGSIEQISQFSAHKVPTEFYYSFSIGIN 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,415
Number of Sequences: 5004
Number of extensions: 43801
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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