Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C13
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0966 + 29776340-29776433,29776581-29776682,29777038-297771...    30   1.3  
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410...    29   3.0  
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284...    29   3.0  
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687...    28   7.0  
10_08_0537 - 18625440-18626804                                         27   9.3  

>04_04_0966 +
           29776340-29776433,29776581-29776682,29777038-29777154,
           29777428-29777621,29777702-29777807,29777908-29778055,
           29778201-29778337,29778436-29778602,29778681-29778974
          Length = 452

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -1

Query: 369 LYSTTRPFHMTY-FYLINFYFLTFIFLLCLLPWYPAYSCVI--QVCTLLATLRIR 214
           +Y    P H+ Y F+ I  Y       +C+L W+P++  ++  QV  ++  L+++
Sbjct: 111 VYGDFLPRHIFYRFHAICAYLRCIFVAMCVLLWWPSFDIILVDQVSVVIPLLKLK 165


>06_01_0579 +
           4099039-4099086,4099798-4099848,4100151-4100286,
           4100287-4100401,4100496-4100528,4101037-4101166,
           4101663-4101751,4102042-4102148,4102238-4102309,
           4102384-4102764,4104907-4105064,4105581-4105674,
           4106082-4106089,4106297-4106387,4107136-4107289,
           4108257-4108377,4108468-4108551,4108946-4109065,
           4109181-4109393,4109482-4109544,4109668-4109783,
           4110132-4110190,4111126-4111445
          Length = 920

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 417 SLSAKSKNVHF*ELIILYSTTRPFHMTYFYLINFYFLTFIFLLCL 283
           +L   SK +HF +  ++  T  PF + Y Y I +  L  + L CL
Sbjct: 21  TLEEDSKALHFLQPDLVLFTGAPFALLYLYYIIYSLLCEVTLKCL 65


>04_04_0465 +
           25427065-25427113,25428099-25428227,25428387-25428479,
           25428681-25428953,25429037-25429288,25429735-25430118,
           25430243-25430483,25431986-25432736
          Length = 723

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 115 SSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAES 228
           S+ S   KT    +FSSM +S ++  ST+   PP  ++
Sbjct: 257 SNSSATRKTGMRSSFSSMTSSTASFVSTIATCPPTVKT 294


>06_03_1496 - 30567968-30568210,30568345-30568513,30568635-30568736,
            30569087-30571855,30572402-30572430,30572546-30572659,
            30572735-30572846,30574730-30574845,30574928-30575068,
            30575121-30575243,30575346-30575478,30575842-30575972,
            30576065-30576300,30577073-30577376
          Length = 1573

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 31   IC-AYTAPFSVQDILDVFGSPIKDFKETFSSDS 126
            +C AY A   V+D+  + G P+ DF++  SS S
Sbjct: 1205 VCDAYRAQQRVEDVQVIIGRPLADFEQFISSAS 1237


>10_08_0537 - 18625440-18626804
          Length = 454

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 16  VFNLFICAYTAPFSVQDILDVF 81
           VFN+ ICAYT    V +++ VF
Sbjct: 184 VFNILICAYTKQEKVDEVVLVF 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,889,248
Number of Sequences: 37544
Number of extensions: 234479
Number of successful extensions: 650
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)