Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C13
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55908| Best HMM Match : Sushi (HMM E-Value=1.6e-12)                 31   0.77 
SB_20102| Best HMM Match : FYVE (HMM E-Value=3.8e-08)                  30   1.3  
SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)                 29   4.1  
SB_11461| Best HMM Match : NHL (HMM E-Value=0)                         28   7.2  
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)               27   9.5  
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)                 27   9.5  

>SB_55908| Best HMM Match : Sushi (HMM E-Value=1.6e-12)
          Length = 465

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 299 FSCCVYCHGILHTPVLSKYVPCLQLSAFG 213
           FS  V  HG+   PV S+  PC++L  FG
Sbjct: 155 FSLSVIVHGVRLVPVDSEVFPCMRLEVFG 183


>SB_20102| Best HMM Match : FYVE (HMM E-Value=3.8e-08)
          Length = 910

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +1

Query: 49  PFSVQDILDVFGSPIKDFKETFSSDSGLNKTNTAFAFSSMNTSVST--IKSTMIEVPPNA 222
           PF   +I    G   +  + + SSD   N+ N   + S M  S  T    S++ E   N 
Sbjct: 244 PFKDANISSATGEQERSLQSSCSSDGANNEENHIVSDSKMEISSETGVCSSSLSEDDSNL 303

Query: 223 ESCKQGTYLDNTGVC 267
           ++ ++G   +N GVC
Sbjct: 304 QTPEEGN--ENNGVC 316


>SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)
          Length = 1381

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -2

Query: 245  YVPCLQLSAFGGTSIIVLLIVLTDVFIELNANAVLVLFNPLSDEN 111
            +VPC+Q++ FG  S++ +L  LT + + L   A+  L +  SD N
Sbjct: 876  WVPCVQMALFGLFSVVYVLPYLTILVVIL---AIPYLRDAFSDRN 917


>SB_11461| Best HMM Match : NHL (HMM E-Value=0)
          Length = 819

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 619 GSRSXLSKPPTLPLTKSQKFMVNDNEQHKIKNTF 518
           GS   L  P  + +TK    +V+DNE+H++K  F
Sbjct: 492 GSSEELCYPIGIAVTKHGDVIVSDNEKHQLKVFF 525


>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
          Length = 1724

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 30  YLRVYRTIFSARHFRCVR*SYKGFQRDILIGQWVK 134
           Y+  YRT+ + R  RC+R S  G     ++  WVK
Sbjct: 95  YIAWYRTLENIRARRCMRTSAFGLCCRFILAHWVK 129


>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
          Length = 1373

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +1

Query: 103 KETFSSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAESCKQGTYLDN 255
           + T ++DSG  + N  F        +   K     V P  E+C   TY+ N
Sbjct: 707 ESTATNDSGFEE-NELFVIDPSTDMIEVTKGLSASVAPFVENCDYRTYIAN 756


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,103,659
Number of Sequences: 59808
Number of extensions: 310530
Number of successful extensions: 1034
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)