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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C13
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97190-1|AAB52366.2|  495|Caenorhabditis elegans Cop-9 signaloso...    29   2.1  
U43283-2|AAC69020.1|  205|Caenorhabditis elegans Rab family prot...    29   3.6  

>U97190-1|AAB52366.2|  495|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 2 protein.
          Length = 495

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +1

Query: 115 SSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAESCKQGTYLDNTGV 264
           + D G  K+++    SS  ++ +++ S++++ PP   SC Q   +D   V
Sbjct: 428 AGDQGTTKSDSKPGTSSEPSTTTSVTSSILQGPPATSSCHQELSMDGLRV 477


>U43283-2|AAC69020.1|  205|Caenorhabditis elegans Rab family protein
           6.2 protein.
          Length = 205

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 79  FGSPIKDFKETFSSDSGLNKTN--TAFAFSSM-NTSVSTI 189
           FG+P+K FK  F  +  + KT+  T F + S  NT  +TI
Sbjct: 4   FGNPLKKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,885,040
Number of Sequences: 27780
Number of extensions: 244952
Number of successful extensions: 829
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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