Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C13
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47140.1 68418.m05811 zinc finger (GATA type) family protein ...    28   5.9  
At5g62630.1 68418.m07861 expressed protein                             27   7.8  

>At5g47140.1 68418.m05811 zinc finger (GATA type) family protein
           contains Pfam:PF00320 GATA zinc finger domain
          Length = 470

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +1

Query: 94  KDFKETFSSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAESCKQGTYLDNTGVCR 270
           K ++E F+      + +T F   +++   S  +S+   V  N+ESC Q    D+T  C+
Sbjct: 82  KPYQENFTVKRANLEFHTGFKRKALDEEASN-RSSSGSVVSNSESCAQSNAWDSTFPCK 139


>At5g62630.1 68418.m07861 expressed protein
          Length = 696

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = +1

Query: 85  SPIKDFKETFSSDSGLNKTNTAFAFSSMNT---SVSTIKSTMIEVPPNAESCKQGTYL 249
           SP+  F E  SSDS L      +  S +N    S S I         N + C  GTYL
Sbjct: 505 SPLSPFGENVSSDSNLTFPILGYNHSEVNKHEGSASIIGGYFYR--SNTDPCSYGTYL 560


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,794,409
Number of Sequences: 28952
Number of extensions: 212884
Number of successful extensions: 577
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)