Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C10
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF067937-7|AAN84819.1|  392|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF067937-6|AAF99915.1|  426|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z68752-7|CAA92982.2|  693|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U13644-7|AAM48536.2|  700|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U13644-6|AAB52678.1|  739|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 261  IGSLDLTNRQKLGAATAGVALDNVNGHGVSLTDTHIPGFGD 383
            IG +DL+    LG A     LDNV+ HG+ L     P  GD
Sbjct: 1832 IGKVDLSQNSSLGMAKL---LDNVSVHGILLDSIMDPTVGD 1869


>AF067937-7|AAN84819.1|  392|Caenorhabditis elegans Hypothetical
           protein F22F7.1b protein.
          Length = 392

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 213 GVKVPFAGNDKNIVSAIGSLDLTNRQ 290
           GV VPF G DK+I++     D T+RQ
Sbjct: 237 GVAVPFPGADKSIINRSQYYDATSRQ 262


>AF067937-6|AAF99915.1|  426|Caenorhabditis elegans Hypothetical
           protein F22F7.1a protein.
          Length = 426

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 213 GVKVPFAGNDKNIVSAIGSLDLTNRQ 290
           GV VPF G DK+I++     D T+RQ
Sbjct: 237 GVAVPFPGADKSIINRSQYYDATSRQ 262


>Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical
           protein T01G9.3 protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +3

Query: 405 VNLFHNDXHDITAKAFATRNMPDIAXVPNFNTVGGGIDYMFKDKIGASATAAHTD--FIH 578
           ++L HN   +ITA AF   N+  +    + N +G   D  F +    +    H D  F H
Sbjct: 261 LDLSHNSIQEITACAFCNTNISKLDL--SHNLLGISKDSPFNEDAFRTMPLRHLDLSFNH 318

Query: 579 RNDY 590
            ND+
Sbjct: 319 MNDF 322


>Z68752-7|CAA92982.2|  693|Caenorhabditis elegans Hypothetical
           protein T12G3.1 protein.
          Length = 693

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -3

Query: 325 SSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSELS--VRAPCASLRTL 152
           +SATPAV AP+  + V    PI  T+ +       L P    P E++  V AP +   + 
Sbjct: 534 TSATPAVTAPASIVPVTPTAPIVETLIVP-----PLPPVESNPEEVTPMVTAPISIHSSF 588

Query: 151 ELVNSSGSS 125
           E ++S   S
Sbjct: 589 ENISSDFES 597


>U13644-7|AAM48536.2|  700|Caenorhabditis elegans Hypothetical
           protein F56D2.6b protein.
          Length = 700

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 109 TIFNTMRSLNY*QALESAGTRTELSRSTPMVPLVLELKYPLLVTTRI 249
           T+   +  LNY QA+   G  TEL       PL  +L   L+ +T +
Sbjct: 479 TLMRALELLNYLQAINDDGELTELGSLMAEFPLDPQLAKMLITSTEL 525


>U13644-6|AAB52678.1|  739|Caenorhabditis elegans Hypothetical
           protein F56D2.6a protein.
          Length = 739

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 109 TIFNTMRSLNY*QALESAGTRTELSRSTPMVPLVLELKYPLLVTTRI 249
           T+   +  LNY QA+   G  TEL       PL  +L   L+ +T +
Sbjct: 479 TLMRALELLNYLQAINDDGELTELGSLMAEFPLDPQLAKMLITSTEL 525


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,045,824
Number of Sequences: 27780
Number of extensions: 319801
Number of successful extensions: 895
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)