Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C08
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    26   3.5  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   4.7  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   6.2  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   8.2  

>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 111 NYNNPSSATPLLVPSALEHYQTALTDPAFYMIWKRVLKMFSLLHQRL 251
           N ++P  +  +  P  L     A T+P    ++++ L++ SL HQRL
Sbjct: 230 NKSSPFGSATVQTP-CLHSVPDAFTNPDVATLYQKFLRLQSLEHQRL 275


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 171 GSVQ-GQMEPITGLR-YWDCYNYVDATKSFLE 82
           G+V+ G +EP  G   Y D   YVD TKS+ E
Sbjct: 15  GNVKIGNVEPAKGNEGYVDNAGYVDCTKSYFE 46


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 509 QEKLNLHLLGNFTCNLDPNVEFLM 438
           QE++ L +L NFTC  + +V+FL+
Sbjct: 528 QEQM-LQVLRNFTCQKEESVDFLL 550


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 288  VAIQKVEVDKLVTYYEYTYVNISASVHMNEVQSQL 392
            V++ + ++D    Y+E  YV+ S S+    +++ L
Sbjct: 1356 VSVGQAKLDNFTVYFENVYVSASLSILRRFIETSL 1390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,651
Number of Sequences: 5004
Number of extensions: 45036
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)