Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C07
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    59   4e-10
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    29   0.64 
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    27   2.0  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    27   2.6  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    26   4.5  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.9  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   7.9  

>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 27/76 (35%), Positives = 42/76 (55%)
 Frame = +2

Query: 350 WRVWVRGVSGHDISTFVHKVVFYLHPSSAFVYPKRVLQEPAYEIHESGCTSIDIPIHVYF 529
           WR++V GV G DIS +V KVVF LH    +  P R ++ P +E+ E+G    DI + ++F
Sbjct: 41  WRIFVEGVDGEDISKWVRKVVFKLH--DTYNNPTRTIESPPFEVIETGWGEFDIMVRIFF 98

Query: 530 KYSXRPKKIRLRYSLR 577
                 K +   + L+
Sbjct: 99  APEAHEKALTFYHHLK 114


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -1

Query: 409 NFVHEGADVVSADSSHPHSPVKR*RSPESGPPRLASVPDL*PYAHAHRL 263
           NF +     +S  S HP    K   +PE+G    A+ P L PY  A +L
Sbjct: 481 NFSNNPPTAMSEQSFHPSVSQKPMDTPENGSNSFAASPYLQPYNSASQL 529


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 421 KVEDNFVHE-GADVVSADSSHPHSPVKR*RSPESGP 317
           ++  N+ ++ G  ++S   S PHSP    R+P S P
Sbjct: 146 QLSSNYTNDTGLSLLSLPKSVPHSPAMHKRTPSSDP 181


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 997

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 359  WVRGVSGHDISTFVHKVVFYLH-PSSAFVYPKRVLQEPAYEI 481
            W+  V GHDI+TF       L  P+  FV  K++ +  A  I
Sbjct: 919  WIVAVDGHDINTFDDFYHMLLEKPTDTFVQVKQMNRRGATSI 960


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 44  PAREPGAASMHSSRPIQNK*EATTITCCANCPSSAH 151
           P   P + SMHS++P + K E  T       PS+ +
Sbjct: 679 PDAIPSSKSMHSNKPFEEKSEKPTTKRLVTNPSNVN 714


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 402 TKLSSTFIHPRLSSTXNEYSKSRHTRS 482
           ++ S++ +HPR S+T    S + H+RS
Sbjct: 145 SQASTSLLHPRRSTTSLLSSSAHHSRS 171


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 122 CCANCPSSAHYT 157
           CC  CP+S H+T
Sbjct: 277 CCETCPNSFHFT 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,927
Number of Sequences: 5004
Number of extensions: 44649
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)