Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C07
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199...    62   2e-10
05_03_0300 + 11969222-11969767                                         33   0.16 
12_01_0512 - 4055074-4055337,4055424-4055727,4055774-4055898,405...    29   3.5  
11_06_0146 + 20621730-20621865,20621947-20622026,20622600-206226...    29   3.5  
04_04_0016 - 22167780-22167873,22167978-22168272,22168380-221684...    28   4.6  
05_02_0018 + 5626122-5626200,5626683-5626709,5626972-5627042,562...    28   6.1  
06_03_0446 + 20874943-20875129,20875217-20875557                       27   8.1  
01_06_1030 - 33942841-33943790,33944748-33944811                       27   8.1  

>06_01_0268 +
           1989069-1989293,1989938-1990020,1990136-1990357,
           1990434-1990621,1990711-1990835,1990988-1991039,
           1991585-1991874,1992229-1992307,1992527-1992657
          Length = 464

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 30/76 (39%), Positives = 45/76 (59%)
 Frame = +2

Query: 350 WRVWVRGVSGHDISTFVHKVVFYLHPSSAFVYPKRVLQEPAYEIHESGCTSIDIPIHVYF 529
           W V+VR  +  D+S  V +VVF LHPS  F  P RV+++P +E+ ESG    +I I +YF
Sbjct: 109 WTVYVRSATNEDLSVIVKRVVFQLHPS--FTNPTRVVEQPPFELSESGWGEFEIAITLYF 166

Query: 530 KYSXRPKKIRLRYSLR 577
                 K++ L + L+
Sbjct: 167 HSDVCEKRLDLFHQLK 182


>05_03_0300 + 11969222-11969767
          Length = 181

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 259 IMQKGILSHSLKCDKTAVVRAAVADICNKRP-PRSCVMSAGRTIS 128
           ++  G L H++   K   V  AVADIC++ P P +C  +AGR  S
Sbjct: 17  LLSAGFLPHAV-AKKGGAVPPAVADICSRTPFPDTCKSTAGRHAS 60


>12_01_0512 -
           4055074-4055337,4055424-4055727,4055774-4055898,
           4055995-4056164,4056264-4056524,4056644-4057153,
           4057309-4057588,4057669-4057971
          Length = 738

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 283 YAHAHRLIIMQKGILSHSLKCDKTAVVRAAVADICNKRPPRSC-VMSAG 140
           Y  AH ++ +     SH       +   AAVA  C KR P SC V++ G
Sbjct: 125 YGAAHLILGVTNNSRSHLRPSSSPSSSSAAVAKYCAKRVPPSCSVLAVG 173


>11_06_0146 +
           20621730-20621865,20621947-20622026,20622600-20622686,
           20622789-20622866,20622947-20623038,20623132-20623333,
           20623644-20623734,20624163-20624221,20624413-20624561,
           20624662-20624743,20624828-20625214
          Length = 480

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 504 IEVQPDSWISYAGSWSTRXG*TKAEDG*R*KTTLCTKVL-MSCPLTPRTHTRQ 349
           ++V+PD W+ YA     + G  K  +      TLC ++L +  P  P  H RQ
Sbjct: 140 LDVRPDGWLDYAAKRIAQLGADKCYN-----RTLCEELLSVLLPAKPPFHPRQ 187


>04_04_0016 -
           22167780-22167873,22167978-22168272,22168380-22168455,
           22168665-22168853,22168955-22169176,22169315-22169413,
           22169502-22169582,22169753-22170060,22171611-22171950,
           22172047-22172110,22172191-22172412,22172865-22173043
          Length = 722

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +2

Query: 329 GRALALDWRVWVRGVSGHDISTFVHKVVFYLHPSSAFVYPKRVLQEPAYEIHESGC 496
           GR  A+ W VWVR   G  +  F  +V   +  S       +++    Y  H + C
Sbjct: 158 GRVEAVRWLVWVRLYRGRKVMAFFKRVEKDIRVSYLLTRIVKLITVELYCTHTAAC 213


>05_02_0018 +
           5626122-5626200,5626683-5626709,5626972-5627042,
           5627123-5627248,5627726-5627755
          Length = 110

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 84  DRYRTSEKLPQSPVALIVRPALITHDLGGLLLQMSATAARTTAVLSHFR 230
           D +R+++K  ++PV  +++P  +  D    LL      + T    SH R
Sbjct: 11  DLFRSNQKYMEAPVPYVIKPRYVYSDAVSDLLAYRGQQSLTRQPCSHVR 59


>06_03_0446 + 20874943-20875129,20875217-20875557
          Length = 175

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 363 CEESADTTSAPSCTKLSSTFIHPRLSSTXNEYSKSRHTRSMNQVA 497
           CE   D +S P+C++   T    R+  T N   K    R  N +A
Sbjct: 105 CEVVLDKSSDPACSETEKTRDRSRVPLTSNNGLKQNGIRYANPIA 149


>01_06_1030 - 33942841-33943790,33944748-33944811
          Length = 337

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 467 PAYEIHESGCTSIDIPIHVYFKYSXRPKKIRLRYSL 574
           P      S  T + + ++ YF YS  P  +RL Y+L
Sbjct: 179 PIVSFLASSGTPLLVNVYPYFAYSADPSSVRLDYAL 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,666,167
Number of Sequences: 37544
Number of extensions: 347650
Number of successful extensions: 1116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)