Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C07
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20570| Best HMM Match : YEATS (HMM E-Value=1.1e-06)                 50   1e-06
SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.072
SB_22890| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00078)          32   0.39 
SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)                 31   0.67 
SB_38428| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_55899| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_46840| Best HMM Match : S-methyl_trans (HMM E-Value=4.2)            28   6.3  
SB_42412| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-33)               28   6.3  

>SB_20570| Best HMM Match : YEATS (HMM E-Value=1.1e-06)
          Length = 135

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 26/56 (46%), Positives = 32/56 (57%)
 Frame = +2

Query: 287 LEVGHACEPRRSAFGRALALDWRVWVRGVSGHDISTFVHKVVFYLHPSSAFVYPKR 454
           LE+GH    R+         DW+V+VRG   +DIS FV KV+F LH S  F  PKR
Sbjct: 14  LELGHTASCRKKLTPEGFTHDWKVFVRGSDHNDISHFVEKVIFNLHES--FPNPKR 67


>SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
 Frame = +2

Query: 350 WRVWVRGVSGH-DISTFVHKVVFYLHPSSAFVYPKRV--LQEPAYEIHESGCTSIDIPIH 520
           W V+VRG+     I ++V  V F+LHPS     P  +  +++P ++I   G     I + 
Sbjct: 271 WMVYVRGLPDDLPIHSYVQNVWFFLHPS---YRPNDIVEIKKPPFQITRRGWGEFPIRVQ 327

Query: 521 VYFKYSXRPKKIRLRYSLR 577
           ++F    R K++ + + L+
Sbjct: 328 LHF-VDSRNKRVDIIHELK 345


>SB_22890| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00078)
          Length = 788

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 466 LLEYSFXVDESRGWMKV-EDNFVHEGADV 383
           ++ Y+F  DE  GWM V +DN +H G DV
Sbjct: 695 IMWYNFLRDEKTGWMGVRDDNSLHGGCDV 723


>SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)
          Length = 1065

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
 Frame = -1

Query: 238 SHSLKCDKTAVVRAAVAD-----ICNKRPPRSCVMSAGRTISATGDC 113
           S  LKCD  +  RAA  D      CNK+   SC     RT +AT  C
Sbjct: 367 SSDLKCDCLSCTRAAKCDRELTCTCNKKWEGSCNAICTRTSNATSSC 413


>SB_38428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/25 (40%), Positives = 20/25 (80%)
 Frame = -2

Query: 420 R*KTTLCTKVLMSCPLTPRTHTRQS 346
           R + TL T+VL +CP+TP+++++ +
Sbjct: 6   RFRPTLLTRVLFACPVTPKSNSKDT 30


>SB_55899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = -1

Query: 550 LWTXAIFKVHVNRYVN*SAT*FMDLVCRLLEYSFXVDESRGWMKV 416
           LWT   F    N  +  + T F DL+CRL++Y   V E R  MKV
Sbjct: 108 LWTPNRFVRGKNHRLQKNCTQFFDLLCRLMDY-LTVTEQR-LMKV 150


>SB_46840| Best HMM Match : S-methyl_trans (HMM E-Value=4.2)
          Length = 774

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -1

Query: 319 PPRLASVPDL*PYAHAHRLIIMQKGILSHSLKCDKTAVVRAAVADICNKRPPRSC-VMSA 143
           PP +ASV DL   A      + Q+  L+ +    + A VR  +    N+  PRS  +   
Sbjct: 324 PPAIASVHDLDSEAEGKLRSLCQEKALTSAATKTREAKVREVLIRFINRAIPRSTRIWLC 383

Query: 142 GRTI 131
           GR I
Sbjct: 384 GRVI 387


>SB_42412| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-33)
          Length = 644

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 366 RTHTRQSSANARPKADRRGSQACPTSSHMRMHIG 265
           RTHT +   N +   ++   Q+C    HMR+H G
Sbjct: 374 RTHTDERPFNCKV-CNKAFKQSCQLKQHMRLHTG 406


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,844,599
Number of Sequences: 59808
Number of extensions: 399250
Number of successful extensions: 1292
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)