Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C07
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77667-2|CAB01234.1|  211|Caenorhabditis elegans Hypothetical pr...    45   4e-05
Z78062-5|CAB01500.1|  516|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL021571-7|CAA16515.1|  516|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z69634-4|CAA93455.2|  674|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z69659-1|CAA93483.1|  329|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U80441-9|AAB37659.3|  288|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AY081955-1|AAL92523.1|  788|Caenorhabditis elegans MAT-1 protein.      27   9.5  
AC006708-13|AAF60415.1|  788|Caenorhabditis elegans Metaphase-to...    27   9.5  

>Z77667-2|CAB01234.1|  211|Caenorhabditis elegans Hypothetical
           protein M04B2.3 protein.
          Length = 211

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 21/60 (35%), Positives = 35/60 (58%)
 Frame = +2

Query: 350 WRVWVRGVSGHDISTFVHKVVFYLHPSSAFVYPKRVLQEPAYEIHESGCTSIDIPIHVYF 529
           W V+++     D + ++ KV F LH S  +  P RV+++P YE+ E+G    +I I +YF
Sbjct: 39  WTVFLKPYLIEDPTKWIRKVQFKLHES--YAVPYRVVEKPPYEVTETGWGEFEIQIRIYF 96


>Z78062-5|CAB01500.1|  516|Caenorhabditis elegans Hypothetical
           protein F16D3.7 protein.
          Length = 516

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +3

Query: 57  QEPLRCTVHDRYRTSEKLPQSPVALIVRPALITHDL---GGLL-LQMSATAARTTAVL 218
           +E LR  + ++ RT E+LP + + L+  PA+I   L   G LL L   A   RT   L
Sbjct: 40  KEQLRIILREKLRTGEQLPPAVLVLLCIPAVIIILLTIFGNLLVLFFKARVGRTNTTL 97


>AL021571-7|CAA16515.1|  516|Caenorhabditis elegans Hypothetical
           protein F16D3.7 protein.
          Length = 516

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +3

Query: 57  QEPLRCTVHDRYRTSEKLPQSPVALIVRPALITHDL---GGLL-LQMSATAARTTAVL 218
           +E LR  + ++ RT E+LP + + L+  PA+I   L   G LL L   A   RT   L
Sbjct: 40  KEQLRIILREKLRTGEQLPPAVLVLLCIPAVIIILLTIFGNLLVLFFKARVGRTNTTL 97


>Z69634-4|CAA93455.2|  674|Caenorhabditis elegans Hypothetical
           protein B0001.6 protein.
          Length = 674

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 424 MKVEDNFVHEGADVVSADSSHPHSPVKR*RSPESGPP 314
           ++  DN  H+  D  S D     SPV    +P SG P
Sbjct: 482 LEANDNLEHQSHDSSSTDGLRDTSPVGNNTNPRSGSP 518


>Z69659-1|CAA93483.1|  329|Caenorhabditis elegans Hypothetical
           protein F07C6.1 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +3

Query: 363 CEESADTTSAPSCTKLSSTFIHPRLSSTXNEYSKSRHTRSMNQVAL--QLTYRFTCTL 530
           CE    T  AP C K +   I   + S+ N Y  +  T     V L  Q+ YR+  T+
Sbjct: 69  CEHDFKTLYAPVCAKCNEFVIGQVVHSSNNSYHLACFTCDECNVHLNSQIAYRYQGTI 126


>U80441-9|AAB37659.3|  288|Caenorhabditis elegans Hypothetical
           protein F27C1.10 protein.
          Length = 288

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 377 GHDISTFVHKVVFYLHPSSAFVYPKRVLQEPAYEIHESGCTSIDI 511
           G D+ T VHK++     S   V+ K   +  A+E  E  CT  D+
Sbjct: 117 GPDVETHVHKMMLNELESKTCVFFKVSWELQAFETIEQECTYPDV 161


>AY081955-1|AAL92523.1|  788|Caenorhabditis elegans MAT-1 protein.
          Length = 788

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 378 PLTPRTHTRQSSANARPKADRRGSQACPTSSHMRMHIGLSLCRRGSS 238
           P T  TH+ ++ ANA   +D   S A    S+ R   G++   RGSS
Sbjct: 309 PHTRATHSSRNRANAALNSDTENSNA----SNTRTRSGIASVTRGSS 351


>AC006708-13|AAF60415.1|  788|Caenorhabditis elegans
           Metaphase-to-anaphase transitiondefect protein 1,
           isoform a protein.
          Length = 788

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 378 PLTPRTHTRQSSANARPKADRRGSQACPTSSHMRMHIGLSLCRRGSS 238
           P T  TH+ ++ ANA   +D   S A    S+ R   G++   RGSS
Sbjct: 309 PHTRATHSSRNRANAALNSDTENSNA----SNTRTRSGIASVTRGSS 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,389,171
Number of Sequences: 27780
Number of extensions: 272698
Number of successful extensions: 785
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)