Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C07
         (577 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45600.1 68418.m05603 YEATS family protein contains Pfam doma...    61   6e-10
At2g18000.1 68415.m02092 YEATS family protein contains Pfam doma...    56   2e-08
At1g66145.1 68414.m07507 CLE18, putative CLAVATA3/ESR-Related 18...    31   0.55 
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    31   0.73 
At5g20330.1 68418.m02419 beta-1,3-glucanase (BG4) identical to t...    29   2.9  
At5g66670.1 68418.m08404 hypothetical protein contains Pfam:PF05...    27   6.8  
At5g20340.1 68418.m02420 beta-1,3-glucanase (BG5) identical to p...    27   6.8  
At4g03220.1 68417.m00441 F-box family protein   ; similar to SKP...    27   9.0  

>At5g45600.1 68418.m05603 YEATS family protein contains Pfam domain
           PF03366: YEATS family
          Length = 268

 Score = 60.9 bits (141), Expect = 6e-10
 Identities = 31/76 (40%), Positives = 45/76 (59%)
 Frame = +2

Query: 350 WRVWVRGVSGHDISTFVHKVVFYLHPSSAFVYPKRVLQEPAYEIHESGCTSIDIPIHVYF 529
           W V+VRG +  DIS  V KVVF LH  S+F  P RV++EP +E+ ESG    +I + ++F
Sbjct: 69  WAVYVRGATNEDISVVVKKVVFQLH--SSFNSPTRVIEEPPFEVSESGWGEFEIAMTLHF 126

Query: 530 KYSXRPKKIRLRYSLR 577
                 K + L + L+
Sbjct: 127 HSDVCDKPLSLYHHLK 142


>At2g18000.1 68415.m02092 YEATS family protein contains Pfam domain
           PF03366: YEATS family
          Length = 202

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 27/76 (35%), Positives = 41/76 (53%)
 Frame = +2

Query: 350 WRVWVRGVSGHDISTFVHKVVFYLHPSSAFVYPKRVLQEPAYEIHESGCTSIDIPIHVYF 529
           W V+VRG +  D+   + +V+F+LHPS  F  P RV+  P + + E G     I I V+F
Sbjct: 65  WTVYVRGATNEDLGVVIKRVIFHLHPS--FNNPTRVVDAPPFALSECGWGEFKIDITVFF 122

Query: 530 KYSXRPKKIRLRYSLR 577
                 KK+ L + L+
Sbjct: 123 HTDVCEKKLELSHVLK 138


>At1g66145.1 68414.m07507 CLE18, putative CLAVATA3/ESR-Related 18
           (CLE18)
          Length = 101

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 427 WMKVEDNFVHEGADVVSADSSHPHSPVKR*RSPESGP 317
           W+ VE+N +    + V  +S H HSP+    SPE  P
Sbjct: 59  WIGVEENNIDRSWNYVDYESHHAHSPIH--NSPEPAP 93


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 12  PPCRACCELDFPLGNQEPLRC 74
           PPCR  C+ ++P G++  LRC
Sbjct: 511 PPCRLLCDEEYPCGHKCKLRC 531


>At5g20330.1 68418.m02419 beta-1,3-glucanase (BG4) identical to to
           plant beta-1,3-glucanase bg4 GI:2808438 from
           [Arabidopsis thaliana]
          Length = 345

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 422 HPSSAFVYPKRVLQE--PAYEIHESGCTSIDIPIHVYFKYSXRPKKIRLRYS 571
           +P SA ++  +  ++  P  ++     T I + I+ YF Y+  P  IRL Y+
Sbjct: 171 YPPSAGMFTSQAREQLVPVLKLLSQTSTPILVNIYPYFAYASDPANIRLDYA 222


>At5g66670.1 68418.m08404 hypothetical protein contains
           Pfam:PF05055: Protein of unknown function (DUF677)
          Length = 408

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = +3

Query: 372 SADTTS-APSCTKLSS-----TFIHPRLSSTXNEYSKSRHTRSMNQVALQLTYRFTCTLN 533
           S+D +S A +C K SS     + +H R +S  +  +    TRS+N  +L   Y +   LN
Sbjct: 39  SSDLSSYASACKKYSSLKSFDSLLHERTNSIISSLAAQAKTRSLNIESLMEVYGYLLELN 98


>At5g20340.1 68418.m02420 beta-1,3-glucanase (BG5) identical to
           plant beta-1,3-glucanase bg5 GI:2808439 [Arabidopsis
           thaliana]
          Length = 354

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 422 HPSSAFVYPKRVLQE--PAYEIHESGCTSIDIPIHVYFKYSXRPKKIRLRYS 571
           +P SA ++  +  ++  P  ++     + I + I+ YF Y+  P  IRL Y+
Sbjct: 180 YPPSAGMFTSQAREQLVPVLKLLSQTNSPILVKIYPYFSYASDPSSIRLDYA 231


>At4g03220.1 68417.m00441 F-box family protein   ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 498

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +1

Query: 388 QHLRAQSCLLPSSILGFRLPXTSTPRAGIR 477
           Q+LRA +  L S+ LGFRLP +S+ R G +
Sbjct: 149 QNLRALT--LKSANLGFRLPPSSSARGGFQ 176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,597,272
Number of Sequences: 28952
Number of extensions: 253760
Number of successful extensions: 751
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)