Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_C03
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 28 0.77
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 27 1.3
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 26 3.1
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy... 26 4.1
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 26 4.1
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 25 5.4
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 7.2
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 25 7.2
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 25 9.5
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 25 9.5
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 9.5
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 28.3 bits (60), Expect = 0.77
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 342 WCLDFLCQNHCNSFVCLKHNAITSEVQQAFCPAIVF 235
WC C N CNSF L ++++ + + P +F
Sbjct: 51 WCGKLFCYNCCNSFAKLPVSSVSVDPTEDLIPQDMF 86
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = +1
Query: 103 SYADVSDRVEFESYDDDVPPVKWPSSTPLTTPVVLIPGLYTYHLEDYSWTES 258
SY D V F DD P+ WP S L + GL T+ + S T S
Sbjct: 28 SYPDSDFLVTFNGEDDPEKPLNWPVSIKLLNTALY--GLTTFAAQFNSTTMS 77
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +1
Query: 70 SMARPQLASFSSYADVSDRVEFESYDDDVPPVKW 171
+ + P+ +SF + V+F + D P VKW
Sbjct: 163 TQSHPRASSFVDKIAAATTVQFRNLQTDAPSVKW 196
>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 436
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 184 ALN*AISQEVRHHHNFQIQPCLRHQRTRRMKRVAV 80
A+N AI + ++NF+I + H R R+ KRVA+
Sbjct: 61 AINEAIKL-LPQNYNFEIHKTIWHIRLRKAKRVAL 94
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 220 YTYHLEDYSWTESLLNFTSDSIVLQANETVTMILTQ 327
+ YHL+ +W ++ NF+ D + E T++L Q
Sbjct: 271 FNYHLKAANWPRTVSNFSKD---VSDGENYTVLLNQ 303
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 224 HIIWKTIAGQKAC*TSLVIALCFKQTKL 307
+IIW +AG S+ IAL F QT L
Sbjct: 76 NIIWDVLAGCSTACLSVPIALSFAQTFL 103
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/43 (25%), Positives = 18/43 (41%)
Frame = +1
Query: 247 WTESLLNFTSDSIVLQANETVTMILTQEIQAPHAPAGDANCTN 375
W+ S FTS + + T AP +P+ +C+N
Sbjct: 397 WSASYSLFTSSNATYSGEQKTYSPTTLSTNAPPSPSSGRSCSN 439
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = +1
Query: 304 TVTMILTQEIQAPHAPAGDANCTNAIAGGDGKCVYLTRCYEA 429
T+ I + + P PA D N GG +C + Y+A
Sbjct: 463 TIVYIRKKNVSYPACPAADCNKKVFDQGGSWRCEKCNKEYDA 504
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 24.6 bits (51), Expect = 9.5
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +1
Query: 85 QLASFSSYADVSDRVEFESYDDDVPPVKWPSSTPLTTPVVLIPGLYTYHLEDYSWTESLL 264
++ FS DR +FE P K PSSTP V P ++ + +++
Sbjct: 163 RIVDFSRIKASPDRKKFEPRRSTELPSKIPSSTPKDDNVQESPAFPDENIT--ALQKNVA 220
Query: 265 NFTS 276
NFTS
Sbjct: 221 NFTS 224
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 1 LPSPQLTADTSYQYQPLSIPQHFSMARPQLASFS 102
L P L+A TS QP S+P ++PQ S S
Sbjct: 313 LELPTLSAVTSDSAQPHSLPASMPSSQPQSRSES 346
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 43 QPLSIPQHFS-MARPQLASFSSYADV 117
+P+ IPQHFS +ARP L S + D+
Sbjct: 339 RPIEIPQHFSPIARP-LTSQEAIVDM 363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.133 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,038,195
Number of Sequences: 5004
Number of extensions: 38296
Number of successful extensions: 129
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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