Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_C03
(540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 32 0.34
02_04_0632 + 24614659-24615528,24615636-24616133 30 1.0
10_08_0674 + 19788198-19789817 29 2.4
05_01_0576 - 5130589-5131995 28 5.5
04_04_0853 + 28745953-28747635 28 5.5
04_04_0592 + 26477974-26479311 28 5.5
02_05_0294 + 27609656-27611305 28 5.5
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 28 5.5
11_03_0002 - 8850264-8850418,8850645-8851772,8851895-8852399 27 7.2
06_03_0454 - 20968052-20969758 27 9.6
03_06_0610 + 35052455-35053429,35054936-35055511 27 9.6
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 31.9 bits (69), Expect = 0.34
Identities = 21/50 (42%), Positives = 27/50 (54%)
Frame = +1
Query: 58 PQHFSMARPQLASFSSYADVSDRVEFESYDDDVPPVKWPSSTPLTTPVVL 207
P +ARP A+ S+ + SD ES DD PVK P++ PL PV L
Sbjct: 122 PAKKPVARPNKAALSTNSSSSDDSSDESLSDD-EPVKKPAA-PLKKPVAL 169
>02_04_0632 + 24614659-24615528,24615636-24616133
Length = 455
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Frame = +1
Query: 316 ILTQEIQAP-----HAPAGDANCTNAIAGGDGKCVYLTRCYEARNITVDLYKTTYCIVDG 480
+LT E P P G T +I D V + C + +TVD+Y Y + DG
Sbjct: 115 VLTSEYALPVLRLGDVPPGGVTTTVSIDDPDQYAVVFSNCQDGVEVTVDVYTEMYNVRDG 174
>10_08_0674 + 19788198-19789817
Length = 539
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 77 AIEKC*GIDNGWYWYEVSAVNCGL 6
A E C + W+WYE+ + CGL
Sbjct: 285 AAESCASVCLEWWWYEIMILLCGL 308
>05_01_0576 - 5130589-5131995
Length = 468
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 271 TSDSIVLQANETVTMILTQEIQAPHAPAGDANCTNAIAGGDG 396
T SI+LQ +T +LT+ ++ P + A A+ A++G G
Sbjct: 196 TCHSIILQVCAAITAVLTRVVRWPDSHAAAASRFQALSGIPG 237
>04_04_0853 + 28745953-28747635
Length = 560
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 77 AIEKC*GIDNGWYWYEVSAVNCGL 6
A+ C + W+WYE+ + CGL
Sbjct: 311 ALPSCVSVCLEWWWYEIMILLCGL 334
>04_04_0592 + 26477974-26479311
Length = 445
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +1
Query: 43 QPLSIPQHFSMARPQLASFSSYADVSDRVEFESYDDDVPPVKWPSSTPLTTPVVLIP 213
+P S P +MA +A+ DVS ++ PP P++T TP +P
Sbjct: 48 RPTSRPNATTMATTTVAAAPPTLDVSMDKSLRAFHASSPPPPTPTTTTTPTPTPPLP 104
>02_05_0294 + 27609656-27611305
Length = 549
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 77 AIEKC*GIDNGWYWYEVSAVNCGL 6
A+ C + W+WYE+ + CGL
Sbjct: 312 ALPSCISVCLEWWWYEIMILLCGL 335
>01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 220 YTYHLEDYSWTESLLNFTSDSI 285
Y +H+ D+ ++ LLNFT++ I
Sbjct: 1094 YLFHMSDHMFSSMLLNFTAEDI 1115
>11_03_0002 - 8850264-8850418,8850645-8851772,8851895-8852399
Length = 595
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +1
Query: 376 AIAGGDGKCVYLTRCYEARNITVDLYKTTYCIVDGGYAGVCCDKAKVDALIINLI 540
A+ GG+ V T N+T T +V+G + G D + D +++++I
Sbjct: 23 AVVGGEAAVVEQTFMVHEMNVTHLCNTTKIYVVNGRFPGPTVDVTEGDTVVVHVI 77
>06_03_0454 - 20968052-20969758
Length = 568
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 77 AIEKC*GIDNGWYWYEVSAVNCGL 6
A C + W+WYEV + CGL
Sbjct: 307 AAPSCVSVCLEWWWYEVMILLCGL 330
>03_06_0610 + 35052455-35053429,35054936-35055511
Length = 516
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 77 AIEKC*GIDNGWYWYEVSAVNCG 9
A+ C G+ W+WYEV V G
Sbjct: 267 AVPSCVGVCLEWWWYEVVTVLAG 289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.133 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,149
Number of Sequences: 37544
Number of extensions: 253523
Number of successful extensions: 864
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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