Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_C03
(540 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57159| Best HMM Match : PI-PLC-X (HMM E-Value=0) 32 0.34
SB_373| Best HMM Match : Somatomedin_B (HMM E-Value=3.5) 31 0.46
SB_8442| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31) 28 5.6
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_16712| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13) 27 7.4
SB_9286| Best HMM Match : DUF240 (HMM E-Value=1) 27 7.4
SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1) 27 9.8
SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_57159| Best HMM Match : PI-PLC-X (HMM E-Value=0)
Length = 1289
Score = 31.9 bits (69), Expect = 0.34
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 100 SSYADVSDRVEFESYDDDVPPVKWPSSTPLTTPVV 204
+S+ + F+ DDDV P P+ TP TP V
Sbjct: 600 TSHGEKHSNFNFDEIDDDVTPTPSPTPTPTPTPAV 634
>SB_373| Best HMM Match : Somatomedin_B (HMM E-Value=3.5)
Length = 404
Score = 31.5 bits (68), Expect = 0.46
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 364 NCTNAIAGGDGKCVYLTRCYEARNITVDLYKTTYC-IVDGGYAGVCCDKAKVD 519
N T + DGKC+ R I +YK Y +V G +AGV +KA ++
Sbjct: 211 NVTVKLTEKDGKCMMNATLRFGREIKYPIYKQAYDELVKGEFAGVSFEKATLE 263
>SB_8442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 502 RSKHPRIR-HRRYSKLFYTNQL*CCELRSNEL 410
+S+H RI+ RRY +L T+QL CE N L
Sbjct: 17 KSRHRRIKKQRRYERLAATSQLSLCESYYNSL 48
>SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31)
Length = 1283
Score = 27.9 bits (59), Expect = 5.6
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 3/105 (2%)
Frame = +1
Query: 106 YADVSDRVEFESYDDDVPPVKWPSST-PLTTPV--VLIPGLYTYHLEDYSWTESLLNFTS 276
Y +++E E + V W S T P+ P + I G Y+ + +S E T
Sbjct: 428 YEQSLEKLEAEDIIERVEHSDWSSPTVPVVKPNGDLRICGGYSVTINKHSTLEQYPVPTL 487
Query: 277 DSIVLQANETVTMILTQEIQAPHAPAGDANCTNAIAGGDGKCVYL 411
+ +++ E V + +P N + G G CVY+
Sbjct: 488 EELLVSRREKVHQTERLRLTINSSPQSPRTIENVLKGLPGCCVYI 532
>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1681
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 397 KCVYLTRCYEARNITVDLYKTTYCIVDGGYAGVCCDKAKVDALI 528
K V T C +NI D+ +T I+D GY G D A D+++
Sbjct: 1480 KHVTETECKLLKNIRQDIASSTDIIIDHGYTGPITD-ACADSIL 1522
>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1535
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 28 TSYQYQPLSIPQHFSMARPQLASFSSY--ADVSDRVEFESYDDDVPP 162
T PL++P S L S +S +D D E +SYDDD P
Sbjct: 393 TEISNSPLNLPNSLSSVSSSLFSKASSFCSDSDDSDEEDSYDDDDDP 439
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/64 (25%), Positives = 26/64 (40%)
Frame = +1
Query: 7 SPQLTADTSYQYQPLSIPQHFSMARPQLASFSSYADVSDRVEFESYDDDVPPVKWPSSTP 186
+P T+ T Y S P + ++P +S+Y + + Y PP +T
Sbjct: 1823 APSATSQTQTSYNSQSYPVSGAYSQPSSVGYSTYGQSTAPSSSQGYSQGGPPS--TQATY 1880
Query: 187 LTTP 198
TTP
Sbjct: 1881 TTTP 1884
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +1
Query: 4 PSPQLTADTSYQYQPLS-IPQHFSMARPQLASFSSYADVSDRV-EFESYDDDVPPVKWPS 177
P +LT S +P P + ++ LA SY + D EF +Y PV+ P+
Sbjct: 1011 PREELTVAVSRTEEPCPRTPLNVTIPSGGLALIDSYYESDDMSREFSAYRFSPSPVRAPA 1070
Query: 178 STPLT 192
TP++
Sbjct: 1071 PTPIS 1075
>SB_16712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 529
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = +1
Query: 283 IVLQANETVTMILTQEIQAPHAPAGDANCTNAIAGGDGKCVYLTRCYEARNITVDLYKTT 462
+V +A E T+ L + A CT+A+A GD C R +T TT
Sbjct: 2 VVSRAKEDDTLNLILFVDTHVATQTKVRCTDAVADGDASCRDRGRSSSVTPVTCSRKATT 61
Query: 463 YCIVDG 480
+ G
Sbjct: 62 TVTLKG 67
>SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)
Length = 1582
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 412 TRCYEARNITVDLYKTTYCIVDGGYAGVCCDKAKVDALI 528
T C +NI D+ +T I+D GY G D A D+++
Sbjct: 485 TECKLLKNIRQDIASSTDIIIDHGYTGPITD-ACADSIL 522
>SB_9286| Best HMM Match : DUF240 (HMM E-Value=1)
Length = 292
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 214 GLYTYHLEDYSWTESLLNFTSDSIVLQANETVTMILTQEIQAPH 345
GLY +H ++ SW ESL + N V LT ++ H
Sbjct: 243 GLYAFHYDEASWIESLDALVHVQVNEIKNSPVLYKLTTSLKKIH 286
>SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1490
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 364 NCTNAIAGGDGKCVYLTRCYEARNITVDLY 453
N N G+GKC Y C +A VDL+
Sbjct: 551 NFVNKYQRGEGKCDYSILCGKAAEFLVDLF 580
>SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 622
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 181 TPLTTPVVLIPGLYTYHLEDYSWTES---LLNFTSDSIVLQANET 306
T L P+V++ L+ + + D SW++S LL + D + AN T
Sbjct: 233 TSLKRPLVVVHDLFNHSIMDVSWSQSGFELLVCSWDGSIAYANFT 277
>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
Length = 231
Score = 27.1 bits (57), Expect = 9.8
Identities = 26/91 (28%), Positives = 31/91 (34%)
Frame = +1
Query: 4 PSPQLTADTSYQYQPLSIPQHFSMARPQLASFSSYADVSDRVEFESYDDDVPPVKWPSST 183
P+ T TSY P P P S +SY + SY PS T
Sbjct: 64 PTTSYTPTTSYTPTPSYTPTTSYTPTPSYTSTTSYTPTTSYTSTTSYTPTPSYTPTPSYT 123
Query: 184 PLTTPVVLIPGLYTYHLEDYSWTESLLNFTS 276
P TP YT Y+ T S + TS
Sbjct: 124 P--TPSYTSTTSYT-PTTSYTPTPSYTSTTS 151
>SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1328
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 412 TRCYEARNITVDLYKTTYCIVDGGYAGVCCD 504
T C +NI D+ +T I+D GY G D
Sbjct: 1074 TECKLLKNIRQDIASSTDIIIDHGYTGPITD 1104
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.133 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,652,479
Number of Sequences: 59808
Number of extensions: 289219
Number of successful extensions: 967
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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