Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_C03
(540 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr... 29 2.8
AC084152-9|AAK39313.1| 296|Caenorhabditis elegans Hypothetical ... 29 2.8
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 28 3.7
AL023821-2|CAA19437.2| 355|Caenorhabditis elegans Hypothetical ... 28 3.7
U58749-3|AAK18875.1| 202|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr... 27 8.6
U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co... 27 8.6
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele... 27 8.6
L14433-7|AAA27972.1| 469|Caenorhabditis elegans Hypothetical pr... 27 8.6
>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical
protein B0393.5 protein.
Length = 1106
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +1
Query: 358 DANCTNAIAGGDGKCVYLTRCYEARNITVDLYKTTYCI-VDGGYAGVCCD 504
+ C DGKC + C E I D K T CI DG + +C D
Sbjct: 427 ECTCHGGYRFEDGKCEDVDECRELPKICGDPNKGTKCINKDGTFECLCKD 476
>AC084152-9|AAK39313.1| 296|Caenorhabditis elegans Hypothetical
protein Y102A11A.1 protein.
Length = 296
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Frame = +1
Query: 58 PQHFSMARPQLASFSSYADVSDRVEFESYDDDVPPVKWPSSTPLTTPV-VLIPGLYTYHL 234
PQ F+ PQL + + +S + + + P +P+S+ + P V+ LYT L
Sbjct: 201 PQLFNQQMPQLQNPQQHNQISQQTQSQMLQPQRPQQLYPASSAIMQPSGVIHLNLYTIQL 260
Query: 235 ----EDYSWTESLLNFTSDSIVLQANETVTMI 318
+ Y+ + +++ S + + ++T +I
Sbjct: 261 PNGHQTYTTSSPIIDQLSSNYLDSVSQTEQII 292
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
protein H03E18.1 protein.
Length = 1147
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/73 (23%), Positives = 30/73 (41%)
Frame = -1
Query: 459 CFIQINCDVASFVATS*VNAFSVATCDCVCAVRVTCWRVWCLDFLCQNHCNSFVCLKHNA 280
C++++N V A + A + C C CA + C FL + + K N
Sbjct: 576 CYVELNDFVLEGTAIAVETAVTPEECKCKCAEGHKLYGEECASFLYYYDSKTCLINKQNR 635
Query: 279 ITSEVQQAFCPAI 241
++ + F P+I
Sbjct: 636 FSNPEKFNFVPSI 648
>AL023821-2|CAA19437.2| 355|Caenorhabditis elegans Hypothetical
protein Y102A5B.3 protein.
Length = 355
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 250 TESLLNFTSDSIVLQANETVTMILTQEIQAPHAPAGDANCTNAIAGGDGKCVYL 411
T ++ +FT S + + T +++ I + HAP+ + +C GKC+ L
Sbjct: 61 TSTVTSFTKTSTISETPSTTSLV---SISSTHAPSNNLSCHIGFELIGGKCLQL 111
>U58749-3|AAK18875.1| 202|Caenorhabditis elegans Hypothetical
protein B0496.4 protein.
Length = 202
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 247 WTESLLNFTSDSIVLQANETVTMILTQEIQAPHAPAGDANCTNA 378
WT + D + QA V+ E PHA +G +N TNA
Sbjct: 26 WTRPDVTSQIDRLRSQATSVVSSPPPHEYAVPHAFSGSSNGTNA 69
>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 454 KTTYCIVDGGYAGVCCDKAKVDALI 528
K C+ D GY G C+K K + LI
Sbjct: 214 KNFRCVCDSGYEGEFCNKDKNECLI 238
>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 454 KTTYCIVDGGYAGVCCDKAKVDALI 528
K C+ D GY G C+K K + LI
Sbjct: 214 KNFRCVCDSGYEGEFCNKDKNECLI 238
>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore
complex protein protein12 protein.
Length = 1847
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -2
Query: 461 VVLYKSTVMLRAS*QRVR*THFPSPPAIAFVQFASPAGACGAWISCVKIIVTV 303
+ L + T+ R + RV + P+ P ++ P G C W S IV+V
Sbjct: 10 LALVQITISYRLNVPRVLLPYHPTVPVSFVLEVTHPTGGCFTWRSTRPDIVSV 62
>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein (
C.elegans glp-1 gene,complete cds. ).
Length = 1295
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 454 KTTYCIVDGGYAGVCCDKAKVDALI 528
K C+ D GY G C+K K + LI
Sbjct: 214 KNFRCVCDSGYEGEFCNKDKNECLI 238
>L14433-7|AAA27972.1| 469|Caenorhabditis elegans Hypothetical
protein C50C3.1 protein.
Length = 469
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 97 FSSYADVSDRVEFESYDDDVPPVKWPSSTPL-TTPVVLI 210
F + D SD V+ D +PP +PSS P TTP++ +
Sbjct: 296 FENNTDTSDEVQ----DFSIPPPPYPSSFPAPTTPLLAL 330
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.133 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,466,377
Number of Sequences: 27780
Number of extensions: 222951
Number of successful extensions: 974
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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