Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C03
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19700.1 68418.m02343 MATE efflux protein-related contains Pf...    33   0.16 
At4g23030.1 68417.m03321 MATE efflux protein-related contains Pf...    29   2.6  
At1g15600.1 68414.m01875 hypothetical protein                          29   2.6  
At1g24130.1 68414.m03044 transducin family protein / WD-40 repea...    28   4.6  
At1g58340.1 68414.m06636 MATE efflux protein-related contains Pf...    27   6.1  
At4g29140.1 68417.m04170 MATE efflux protein-related several hyp...    27   8.0  
At3g27720.1 68416.m03461 zinc finger protein-related contains Pf...    27   8.0  

>At5g19700.1 68418.m02343 MATE efflux protein-related contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 508

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 77  AIEKC*GIDNGWYWYEVSAVNCGL 6
           AI  C G+   W+WYE+  V CGL
Sbjct: 265 AIPSCIGVCLEWWWYEIMTVLCGL 288


>At4g23030.1 68417.m03321 MATE efflux protein-related contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 502

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 77  AIEKC*GIDNGWYWYEVSAVNCGL 6
           AI  C  +   W+WYE+  + CGL
Sbjct: 262 AIPSCVSVCLEWWWYEIMILLCGL 285


>At1g15600.1 68414.m01875 hypothetical protein
          Length = 220

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 387 TCDCVCAVRVTCWRVW 340
           TC C+  + + CWR W
Sbjct: 85  TCGCIATLPILCWRFW 100


>At1g24130.1 68414.m03044 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats
           (PF00400);similar to beta transducin-like protein
           HET-D2Y (GI:17225210) [Podospora anserina].
          Length = 415

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +1

Query: 4   PSPQLTADTSYQYQPLSIPQHFSMARPQLASFSSYADVSDRVEFESYDDDVPPVKWPSST 183
           PS  L    S+Q+Q  S+  H        +S+ S   VSD++ +    +    V WP   
Sbjct: 40  PSLPLVPSLSFQHQSSSVDHHCLATLKDKSSYVSSLAVSDKLLYTGSSNSEIRV-WPREP 98

Query: 184 PLT 192
           P +
Sbjct: 99  PFS 101


>At1g58340.1 68414.m06636 MATE efflux protein-related contains Pfam
           profile: PF01554 uncharacterized membrane protein family
           UPF0013
          Length = 532

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 77  AIEKC*GIDNGWYWYEVSAVNCGL 6
           AI  C  +   W+WYE   + CGL
Sbjct: 287 AIPTCVSVCLEWWWYEFMIILCGL 310


>At4g29140.1 68417.m04170 MATE efflux protein-related several
           hypothetical proteins - Arabidopsis thaliana; contains
           Pfam profile PF01554: Uncharacterized membrane protein
           family
          Length = 532

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 44  WYWYEVSAVNCGL 6
           W+WYE+  V CGL
Sbjct: 296 WWWYEIMIVLCGL 308


>At3g27720.1 68416.m03461 zinc finger protein-related contains
           Pfam:PF01485 IBR domain
          Length = 493

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 85  QLASFSSYADVSDRVEFESYDDDVPPVKWPSSTP 186
           QL S +  A+  DR   ESY +D   VKW  STP
Sbjct: 142 QLVS-TELAEKFDRFLIESYVEDNNMVKWCPSTP 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.133    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,686,349
Number of Sequences: 28952
Number of extensions: 201717
Number of successful extensions: 684
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)