Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C02
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.77 
SB_40436| Best HMM Match : EGF_CA (HMM E-Value=0.0038)                 29   2.4  
SB_11985| Best HMM Match : hATC (HMM E-Value=0.022)                    29   2.4  

>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 13/54 (24%), Positives = 30/54 (55%)
 Frame = +3

Query: 54  FVYILFIVNFAKVNADCGIVSKDDWDGLTPVHVEYLNRPVKLVIIQHTDTPQCL 215
           F+Y++ + +   +N + G+ S  +  G T  H++ LNR V  V+ + ++  + +
Sbjct: 565 FIYLIHLFSDLGINGEAGVDSSLNATGRTKRHLKQLNRHVSAVVQRRSNVERSI 618


>SB_40436| Best HMM Match : EGF_CA (HMM E-Value=0.0038)
          Length = 676

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 328 YTFAFPPIRNAEPMSQYFNVSIW*SWMLLTRAAHASFVKHCG 203
           YTF+   +R  E   + F+ S+W   +L+TR+  ASF  + G
Sbjct: 69  YTFS---LRKGEESKKLFDYSLWTRVLLVTRSKVASFTSNTG 107


>SB_11985| Best HMM Match : hATC (HMM E-Value=0.022)
          Length = 865

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 328 YTFAFPPIRNAEPMSQYFNVSIW*SWMLLTRAAHASFVKHCG 203
           YTF+   +R  E   + F+ S+W   +L+TR+  ASF  + G
Sbjct: 26  YTFS---LRKGEESKKLFDYSLWTRVLLVTRSKVASFTSNTG 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,082,220
Number of Sequences: 59808
Number of extensions: 454820
Number of successful extensions: 901
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)