Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C02
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical p...    30   1.2  
AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase...    30   1.2  
AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical...    29   2.7  
Z67882-6|CAA91804.1|  406|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z50797-10|CAA90677.1|  406|Caenorhabditis elegans Hypothetical p...    27   8.4  

>Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical
           protein T04A11.6 protein.
          Length = 988

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = +3

Query: 69  FIVNFAKVNADCGIVSKDDWDGLTPVHVEYLNRPVKLVIIQHTDTPQCLTNDACAARVRS 248
           F+++ A   +  G   + D+  L+ +  +Y N PV ++ +  T TP+ +T+     ++++
Sbjct: 372 FVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTATATPKIVTDARDHLKMQN 431

Query: 249 ----IQDYHMDTLKY 281
               I  +  D LKY
Sbjct: 432 SKLFISSFVRDNLKY 446


>AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase
           protein.
          Length = 988

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = +3

Query: 69  FIVNFAKVNADCGIVSKDDWDGLTPVHVEYLNRPVKLVIIQHTDTPQCLTNDACAARVRS 248
           F+++ A   +  G   + D+  L+ +  +Y N PV ++ +  T TP+ +T+     ++++
Sbjct: 372 FVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTATATPKIVTDARDHLKMQN 431

Query: 249 ----IQDYHMDTLKY 281
               I  +  D LKY
Sbjct: 432 SKLFISSFVRDNLKY 446


>AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.43 protein.
          Length = 186

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 186 IQHTDTPQCLTNDACAARVRSIQDYHMD 269
           +QH+  P+ +  +AC+   +SI  YH++
Sbjct: 60  VQHSRMPRHMEQEACSLAAKSIMTYHLE 87


>Z67882-6|CAA91804.1|  406|Caenorhabditis elegans Hypothetical
           protein F22E10.5 protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +3

Query: 270 TLKYWDIGSAFLIGGNAKVYEGSGWVHV 353
           TLKY+ +GS+FL+     +Y+  G+VHV
Sbjct: 225 TLKYFVVGSSFLV----SLYQIHGYVHV 248


>Z50797-10|CAA90677.1|  406|Caenorhabditis elegans Hypothetical
           protein F22E10.5 protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +3

Query: 270 TLKYWDIGSAFLIGGNAKVYEGSGWVHV 353
           TLKY+ +GS+FL+     +Y+  G+VHV
Sbjct: 225 TLKYFVVGSSFLV----SLYQIHGYVHV 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,474,782
Number of Sequences: 27780
Number of extensions: 339784
Number of successful extensions: 833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)