Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C01
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    28   0.86 
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar...    27   2.6  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    27   2.6  
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    27   2.6  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.1  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   8.0  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   8.0  

>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -3

Query: 576 LENEKLVLGSHEDFNER-RIELLPTGVEVQRCGRSLEEIQ-FSPQRVVITIKDIG 418
           LEN+KL L SHE+  E+ + E +PT  +  + G     I   S + V+ T   +G
Sbjct: 55  LENDKLDLNSHENEGEKTKTETVPTRKQFPKVGEFNSAIHGLSSESVLRTCFRVG 109


>SPAC17G8.05 |med20||mediator complex subunit
           Med20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 180

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 387 VLEHVVHSGTDSVEVRNLRNIWQVFSGECF-GTEIVVVVMEEIYFTGSRH 241
           +L HV + GT+SV++   R I Q F  +CF      V  + E +F   RH
Sbjct: 111 ILFHVTYDGTESVDL--ARPIIQEFFLKCFLQNNKSVTPVYESFFNQPRH 158


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 336 LRNIWQVFSGECFGT--EIVVVVMEEIYFTGSRHFV 235
           +  IW V SG+C  T  E + V +  + FT +R ++
Sbjct: 203 MARIWDVLSGQCLKTLVEPINVPLSNLQFTENRKYL 238


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 441 LLSGGKTESLQDSDHIAGLQRRLEE 515
           +L GGK+ +  D+D +AG + +LEE
Sbjct: 246 ILRGGKSGTNFDADSVAGAKAKLEE 270


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 358 GAGVDYMFKDKIGASATAAHTDVFNRNDYSLGG 456
           G+G   +F DK G    A     F++ DYS  G
Sbjct: 61  GSGASIIFADKAGLKFEAERYGKFDQIDYSTKG 93


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 193  HGATLTKTHIPGFGDKMTAAGKV 261
            HG T+   HI   GD MT  G+V
Sbjct: 1292 HGLTVDPRHIMLLGDVMTCKGEV 1314


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 178 DNVNGHGATLTKTHIPGFGDKMTAAGKVNL 267
           +N     AT T T   GFGDK + AGK N+
Sbjct: 251 ENKESTTATSTLTDA-GFGDKSSTAGKHNV 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,458
Number of Sequences: 5004
Number of extensions: 54103
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)