Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_C01
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0922 + 20834195-20836603                                         31   0.88 
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572...    29   2.0  
04_03_0916 + 20794240-20794246,20794585-20796545                       29   2.0  
04_03_0913 + 20777859-20780309                                         28   6.2  
12_02_0244 - 16241243-16241279,16241781-16241848,16241930-162420...    27   8.2  
09_03_0172 - 13072575-13073800,13075919-13076054                       27   8.2  
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485...    27   8.2  
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973...    27   8.2  

>04_03_0922 + 20834195-20836603
          Length = 802

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 279 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 410
           QP+ QC       P    + +EL  C+C  G  ++  +DW + DR
Sbjct: 290 QPKVQCDVFAVCGPFTICNDNELGFCKCMKGFSIKSPKDWELDDR 334


>08_01_0663 +
           5721902-5723176,5724162-5724233,5724405-5724560,
           5724655-5724844,5725173-5725255
          Length = 591

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 384 LEHVVHSGTDSVEVRNLRNIWQVFSGECFGTEIVVVVME 268
           LE + HSG  + +V  L N W ++    F  + VV+V E
Sbjct: 417 LELLAHSGEVNKQVPRLSNFWNMYFTHHFQVDTVVMVRE 455


>04_03_0916 + 20794240-20794246,20794585-20796545
          Length = 655

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 279 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 410
           QP+ QC       P    + +EL +C C  G  +   +DW + DR
Sbjct: 135 QPKAQCDVYSICGPFTVCTDNELPNCNCIKGFTITSLEDWVLEDR 179


>04_03_0913 + 20777859-20780309
          Length = 816

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +3

Query: 279 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 410
           QP+  C       P      +EL HC C  G  V   +DW + DR
Sbjct: 288 QPKAPCDVYAICGPFTVCIDNELPHCNCIKGFTVTSLEDWELEDR 332


>12_02_0244 -
           16241243-16241279,16241781-16241848,16241930-16242032,
           16242095-16242256,16242305-16242369,16242547-16242612,
           16242738-16242829,16243029-16243134,16243231-16243279,
           16243387-16243540,16243661-16243687,16243797-16243959,
           16244621-16244701
          Length = 390

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -3

Query: 402 RCTNLVLEHVVHSGTDSVEVRN--LRNIWQVFSGECF 298
           R  NLV+++V HSG + +++    LRN+   FS  CF
Sbjct: 354 RLQNLVMQNVDHSGGEFIDLLQGLLRNMLFGFSRICF 390


>09_03_0172 - 13072575-13073800,13075919-13076054
          Length = 453

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 450 QRVVITIKDIGVSGGRRCTNLVLEHVV 370
           + V++T+KD+   GGR CT L  E  +
Sbjct: 281 RNVILTMKDLTAVGGRFCTYLSKEKAI 307


>07_01_0646 +
           4853546-4853623,4853732-4855357,4855467-4855751,
           4856131-4856277
          Length = 711

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 25  AGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 198
           AG  + +     G  V   + G +NH +S +G          GA TAG AY+ +N  G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226


>01_01_1208 +
           9733010-9733114,9733920-9733979,9735254-9736280,
           9736332-9736621
          Length = 493

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -1

Query: 191 PFTLS*ANPAVAAPNFIWLVRSTEPRALSL*FSF-PVIGTLTIAPEVPSELTVSAPACRR 15
           P TL   +PA AA + IW     +P    +  SF P +     APE P  L  +  A  R
Sbjct: 426 PKTLRIDDPAEAAKSSIWATLGIKPDDKGIFKSFQPNVAKNGTAPESPQALQANPAAFSR 485

Query: 14  N 12
           +
Sbjct: 486 S 486


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,634,860
Number of Sequences: 37544
Number of extensions: 397633
Number of successful extensions: 968
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)