Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B23
         (84 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces...    24   3.1  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    22   9.5  

>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 113

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 28  VSTISGITLFSCFFCTF 78
           VST+ G T+FS FF  F
Sbjct: 91  VSTLHGKTIFSIFFIIF 107


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -2

Query: 71  QKKQLNKVIPLI 36
           Q KQL+KVIPL+
Sbjct: 274 QVKQLHKVIPLV 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 320,637
Number of Sequences: 5004
Number of extensions: 2049
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 9
effective length of database: 2,317,442
effective search space used: 41713956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)