Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B23
         (84 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0104 + 9190779-9191847,9192544-9193332,9193652-9194049           25   6.3  

>10_05_0104 + 9190779-9191847,9192544-9193332,9193652-9194049
          Length = 751

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +1

Query: 4   HSSHQTQR---VSTISGITLFSCFFCTFY 81
           HS HQ Q    +  + G T+F+C   TFY
Sbjct: 367 HSKHQVQLILIICVVGGFTIFAC-LVTFY 394


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,917,050
Number of Sequences: 37544
Number of extensions: 11564
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 14,793,348
effective HSP length: 9
effective length of database: 14,455,452
effective search space used: 260198136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)