Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B23
         (84 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel...    27   2.2  
At5g14570.2 68418.m01709 transporter, putative similar to trans-...    25   6.9  
At5g14570.1 68418.m01708 transporter, putative similar to trans-...    25   6.9  

>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
           putative (CNGC16) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 705

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 16  QTQRVSTISGITLFSCFFC 72
           Q+   ST+S  T+FSCF C
Sbjct: 342 QSLAASTLSSETIFSCFIC 360


>At5g14570.2 68418.m01709 transporter, putative similar to
          trans-membrane nitrate transporter protein AtNRT2:1
          [Arabidopsis thaliana] GI:3747058, high-affinity
          nitrate transporter ACH1 [Arabidopsis thaliana]
          GI:3608362; contains Pfam profile PF00083: Sugar (and
          other) transporter
          Length = 397

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 25 RVSTISGITLFSCFFCTFYI 84
          R   ++ ++LFSCFF TF I
Sbjct: 40 RAFHLAWLSLFSCFFSTFSI 59


>At5g14570.1 68418.m01708 transporter, putative similar to
          trans-membrane nitrate transporter protein AtNRT2:1
          [Arabidopsis thaliana] GI:3747058, high-affinity
          nitrate transporter ACH1 [Arabidopsis thaliana]
          GI:3608362; contains Pfam profile PF00083: Sugar (and
          other) transporter
          Length = 493

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 25 RVSTISGITLFSCFFCTFYI 84
          R   ++ ++LFSCFF TF I
Sbjct: 40 RAFHLAWLSLFSCFFSTFSI 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,649,538
Number of Sequences: 28952
Number of extensions: 10650
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 12,070,560
effective HSP length: 9
effective length of database: 11,809,992
effective search space used: 212579856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)