Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B22
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)                   30   1.9  
SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_20480| Best HMM Match : RVT_1 (HMM E-Value=0.00014)                 29   2.4  
SB_39682| Best HMM Match : Transposase_25 (HMM E-Value=4.8)            29   3.2  
SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_22188| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_19034| Best HMM Match : Metallothio (HMM E-Value=9)                 28   5.7  
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)        28   7.5  
SB_1675| Best HMM Match : ig (HMM E-Value=5.6e-05)                     28   7.5  
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
          Length = 3037

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = +3

Query: 141 SRRSVTTNNENSSTANIKICAPQTPCAWSVYRPT--GRIIDMNITNNYCECASDSECQYA 314
           +R++ ++ NEN S +  K+C  Q   + SV  P    +++D  + N+  +C   S+   A
Sbjct: 203 TRQAASSGNENKSASERKVC-EQPEASSSVEMPNIECKVVDDKLDNSESKCPVCSKVFPA 261

Query: 315 EDDSTGVVYRCRPAVEEDKTTD 380
            D    +       +E   T D
Sbjct: 262 TDSEEEMNAHALKCLENTSTVD 283


>SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = +3

Query: 141 SRRSVTTNNENSSTANIKICAPQTPCAWSVYRPT--GRIIDMNITNNYCECASDSECQYA 314
           +R++ ++ NEN S +  K+C  Q   + SV  P    +++D  + N+  +C   S+   A
Sbjct: 203 TRQAASSGNENKSASERKVC-EQPEASSSVEMPNIECKVVDDKLDNSESKCPVCSKVFPA 261

Query: 315 EDDSTGVVYRCRPAVEEDKTTD 380
            D    +       +E   T D
Sbjct: 262 TDSEEEMNAHALKCLENTSTVD 283


>SB_20480| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
          Length = 332

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 303 CQYAEDDSTGVVYRCRPAVEEDKTTDSFQTSTHE 404
           CQ+  ++   +  + +P   +DK +DSF T + E
Sbjct: 105 CQFGREEQLKLAMKTKPRCSQDKGSDSFDTVSRE 138


>SB_39682| Best HMM Match : Transposase_25 (HMM E-Value=4.8)
          Length = 201

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 126 AMVPRSRRSVTTNNENSSTANIKICAPQTP 215
           A  P + RS TTN E+SS  N K    +TP
Sbjct: 3   AQAPATPRSATTNPEDSSPGNRKAANRETP 32


>SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 126 AMVPRSRRSVTTNNENSSTANIKICAPQTP 215
           A  P + RS TTN E+SS  N K    +TP
Sbjct: 300 AQAPATPRSATTNPEDSSPGNRKAANRETP 329


>SB_22188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1046

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 295 IANASMQRTIRRVSCTDAVQQSKKTKQRIAS 387
           +AN S+ R+   VS T AV+ S KTK+ ++S
Sbjct: 738 LANGSIPRSASEVSSTLAVKASDKTKRSLSS 768


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -1

Query: 429  HNISRNISVHACLSGSYPLFCLLRLLDGICTRHPSNRPLHTGIR 298
            ++ S N   +A    +Y +  + +L+DGI  R  +NR +H G++
Sbjct: 3865 NDASINFGFNALSGAAYTVSGVNKLIDGISHRRGNNRYIHQGLQ 3908


>SB_19034| Best HMM Match : Metallothio (HMM E-Value=9)
          Length = 228

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 401 MRACLEAIRCFVFFDCWTASVHDTRRIVLCILAFAIACTLTVVIRYVHIYNS 246
           MR C+ A +C   F    A+V+    + +CI A    C    +  YV++ +S
Sbjct: 157 MRMCICATQCECVFVPLNANVYLCHSMRMCICATQCECVFVPLNAYVYLCHS 208


>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
          Length = 1960

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
 Frame = +3

Query: 36   SFVFRLPAAPQSAIMNRSLIILLVSCVLAAAMVPRSRRSVTTNNE--------NSSTANI 191
            S+V  +     S  + RSL+   +   ++ +M+P +   + T N         +SST N+
Sbjct: 1134 SYVANMTTLDSSVSLTRSLLSTTLIPSISTSMLPYNTTVIATPNTTRLATSTISSSTVNV 1193

Query: 192  KICAPQTPCAWSVYRPTGRIIDMNITNNYCECASDS 299
               +  +    ++       I +NIT+N     +D+
Sbjct: 1194 SAISTTSSIESTIMASVASSIQLNITSNTTMAVNDT 1229


>SB_1675| Best HMM Match : ig (HMM E-Value=5.6e-05)
          Length = 964

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 7/34 (20%)
 Frame = -1

Query: 369 CLLR--LLDGICTR-----HPSNRPLHTGIRYRL 289
           CLL   LL  +CTR     HP++RP++  + YRL
Sbjct: 659 CLLPFILLTALCTRLFITVHPAHRPMYAPVYYRL 692


>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2835

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 105  VSCVLAAAMVPRSRRSVTTNNENSSTANIKICAPQTPCAWSV--YRPTGRIIDMNITNN 275
            V+C   +  +PR+        + ++T +I++   + P  WSV     T  ++D+ +  N
Sbjct: 1385 VTCTKGSVKLPRTESLNINIRQENNTIDIQLAELRNPFTWSVTSKNMTSSVVDLVLMKN 1443


>SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 362 FDCWTASVHDTRRIVLCILAFAIACTLTVVIRYVHIYNSPS 240
           F    AS+   RRI   +L F +   LTV++ +V  + SP+
Sbjct: 297 FSAVRASIEFRRRIQNFLLCFYVPTILTVMLSWVSFFISPN 337


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,488,892
Number of Sequences: 59808
Number of extensions: 474734
Number of successful extensions: 1225
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)