Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B21
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   1.9  
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    26   2.5  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   3.3  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   5.7  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    25   5.7  
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    24   7.6  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    24   7.6  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    24   7.6  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    24   10.0 

>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
            Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 321  IRHVSKDWSGLA*DIISDNQFHLLRILEPAVLEDA 217
            I+H+S    GL    + D   HLL IL P +LE++
Sbjct: 1076 IKHLSLGCVGLG---VEDAMIHLLNILWPNILEES 1107


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
 Frame = -1

Query: 396 PGVSPLVLQTRIALSDQIRIGWFT*IRHVSKDWSGLA*DIISDNQFHLLRILEPAVLED- 220
           P +SP ++Q+ +A SD+        +  VS D    A DII+     LL I+ P  L D 
Sbjct: 29  PVISPALIQSELAASDET-------LAFVS-DQRRQAADIIAGRDDRLLLIVGPCSLHDP 80

Query: 219 ACLHLISVAFVRSVMARESPLFIHLVMRA 133
                 ++   +  +  +  L  H++MRA
Sbjct: 81  VAAKEYAIRLQKEAIKHKKDL--HIIMRA 107


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 9/22 (40%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +1

Query: 100 LVKVKL-VPYGKSTHDKVNEKW 162
           L++++L + Y  S +D++NEKW
Sbjct: 776 LIRIELDIKYATSFYDELNEKW 797


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 49  KKFITTQLAPVWRDFRGLVKVKLVPY 126
           K+ ITT +  VW  FR L+  + VPY
Sbjct: 183 KESITTAVRWVWHAFRILLITRGVPY 208


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
 Frame = +2

Query: 155 KSGLSRAITDLTNATEIRCKHASSRTAGS--------RIRRRWNWLSDMM 280
           +SG  + +  LTN+ E++ +HA +  A          RI +R  W+ D M
Sbjct: 491 ESGQHKRMASLTNSREMQIQHAPTTFAAETIQCVLPIRIEKRVVWMEDGM 540


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 67  QLAPVWRDFRGLV-KVKLVPYGKSTHDKVNEKWTFTCHH 180
           QL  + R   GLV KV LVPY  S+    ++ W    H+
Sbjct: 234 QLQLILRQTNGLVIKVFLVPYNVSSMVDCSKTWIRQKHY 272


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 114 LNLDESSEVPPDGRQLCRDELLTV 43
           L+LDE +  P DGR + +D  L V
Sbjct: 288 LHLDEGTICPADGRLITKDCFLQV 311


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +2

Query: 203 IRCKHASSRTAGSRIRRRWNWLSDMMSQASPDQSLD 310
           +RC+ A   T  S      NWL + M     D+ ++
Sbjct: 593 VRCQRALLATGNSDTETAMNWLFEHMEDPEIDKPIE 628


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 17  PCTMNPSARTVRSSSRHSWRPSGGTSEDSSRLS 115
           P T + S+ +  SSS  S + S  +S+ SSR S
Sbjct: 141 PSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSS 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,744,541
Number of Sequences: 5004
Number of extensions: 34314
Number of successful extensions: 79
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)