Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_B21
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1209 + 35427160-35427318,35427436-35427501,35427737-354278... 61 3e-10
03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267... 59 1e-09
03_02_0673 - 10328994-10329281 44 3e-05
10_08_0372 + 17280560-17280811,17280901-17281065,17281305-172814... 31 0.44
03_02_0844 + 11695159-11695263,11695402-11695463,11695789-116958... 31 0.44
12_02_0763 + 22953749-22953884,22955036-22955199,22955695-229563... 28 2.4
02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369... 28 3.1
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90... 27 5.5
12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497 26 9.5
10_08_0643 + 19541991-19542188,19543261-19543515,19543598-195437... 26 9.5
04_04_0368 + 24741755-24741970,24742415-24742811,24742892-247431... 26 9.5
03_04_0153 + 17745473-17745889,17746120-17746272,17747307-177475... 26 9.5
03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-78... 26 9.5
>01_06_1209 +
35427160-35427318,35427436-35427501,35427737-35427877,
35428342-35428434,35428530-35428646,35428890-35429054
Length = 246
Score = 61.3 bits (142), Expect = 3e-10
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Frame = +1
Query: 13 IAVYYESLCPDSKKFITTQLAPVWRD-FRGLVKVKLVPYGKSTHDKVNEKWTFTCHHGPD 189
++VYYE+LCP F+ LA ++RD +V ++LVP+G + +V+ + TC HG +
Sbjct: 1 MSVYYETLCPFCSGFVVNDLARIFRDGLSPVVDLRLVPFG---NGRVSPDGSITCQHGEE 57
Query: 190 ECYGNKMQACILK 228
EC N ++AC+++
Sbjct: 58 ECQLNAIEACVIR 70
>03_02_0672 -
10325935-10326150,10326308-10326400,10326568-10326708,
10326828-10326893,10327099-10327359
Length = 258
Score = 59.3 bits (137), Expect = 1e-09
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Frame = +1
Query: 4 KVKIAVYYESLCPDSKKFITTQLAPVWRD-FRGLVKVKLVPYGKSTHDKVNE-KWTFTCH 177
KV +A+YYESLCP S F+ LA V+RD V + LVPYG + +V + K +
Sbjct: 31 KVDVALYYESLCPYSAMFVVGSLAKVFRDGLLDAVDLSLVPYGNA---RVKDGKISCQVE 87
Query: 178 HGPDECYGNKMQACIL 225
HG +EC+ N ++AC +
Sbjct: 88 HGSEECFLNTVEACAI 103
>03_02_0673 - 10328994-10329281
Length = 95
Score = 44.4 bits (100), Expect = 3e-05
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +1
Query: 1 QKVKIAVYYESLCPDSKKFITTQLAPVWRD-FRGLVKVKLVPYGKS 135
+KV +A+YYE+LCP +FI LA ++ D V ++LVPYG +
Sbjct: 37 EKVPLALYYETLCPYCSRFIVNHLAGIFEDGIVDAVDLRLVPYGNA 82
>10_08_0372 +
17280560-17280811,17280901-17281065,17281305-17281410,
17281432-17281487,17281607-17282201,17282863-17282975,
17283106-17283326,17284113-17284437
Length = 610
Score = 30.7 bits (66), Expect = 0.44
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 14/116 (12%)
Frame = +1
Query: 22 YYESLCPDSKKFITTQLAPV--------WRDFRGLVKVKLVPYGKSTHDKVNEKWTFTC- 174
+YE CP ++ + + P W R +V +P+ H+K ++ W
Sbjct: 116 HYERHCPPPERRLNCLIPPPHGYKVPIKWPKSRDIVWKANIPHTHLAHEKSDQNWMIDAG 175
Query: 175 -----HHGPDECYGNKMQACILKDRRLQDTEKMELVI*YDVSSEPGPIFGYVPNSS 327
HHG D+ N KD + + + V+ DV GY+ +S+
Sbjct: 176 GGTHFHHGADKYIANIANMLKFKDNNINNEGMLRTVL--DVGCGVASFGGYLLSSN 229
>03_02_0844 +
11695159-11695263,11695402-11695463,11695789-11695876,
11695958-11696019,11696250-11696346,11696592-11696984,
11697072-11697611,11697856-11697966,11698102-11698242,
11698290-11698394,11698480-11698557,11699346-11699472,
11699580-11699625,11699709-11699754
Length = 666
Score = 30.7 bits (66), Expect = 0.44
Identities = 20/74 (27%), Positives = 38/74 (51%)
Frame = +2
Query: 158 SGLSRAITDLTNATEIRCKHASSRTAGSRIRRRWNWLSDMMSQASPDQSLDTCLIQVNQP 337
S S+ +T+ +++ CK+ SS + S+ + S QASPD SL + I+ +P
Sbjct: 421 SKTSKNNASVTDQSDVPCKYTSSDASNSQAWSAFEAKSVSTQQASPDLSLMSS-IEPKEP 479
Query: 338 IRI*SDKAMRVWRT 379
I + +++W +
Sbjct: 480 I---DENKLQLWHS 490
>12_02_0763 +
22953749-22953884,22955036-22955199,22955695-22956307,
22968553-22968874,22969107-22969373,22969692-22970460
Length = 756
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = -1
Query: 123 RHQLNLDESSEVPP---DGRQLCRDELLTVRAEG 31
RH+ D SSE PP DG + RDE T R G
Sbjct: 175 RHRCRADPSSESPPATADGIYVPRDEAFTERRAG 208
>02_01_0509 +
3694689-3695683,3695799-3695946,3696864-3696943,
3697214-3698062,3698193-3698337,3698426-3698677,
3698780-3699089,3699415-3699524
Length = 962
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 196 YGNKMQACILKDRRLQDTEKMELVI*YDVSSEPGP 300
+G M+ +KD +L+D E +LV+ DV E P
Sbjct: 337 FGTAMEQEDVKDTKLEDDEMSQLVLETDVELEDNP 371
>04_01_0083 +
904473-905167,905247-905347,905902-905994,907322-907968
Length = 511
Score = 27.1 bits (57), Expect = 5.5
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = -3
Query: 265 PVPSSPYPGACGP*GCMLASYFRSIRQVRDGT*KSTFHSPCHACSFHKAPA*P*RVL*SP 86
P P +P P G M AS +S +QV +T H P A + AP +P
Sbjct: 50 PTPRTPPPAGSGSHRAMAASSKKSTKQVVVAAKTTTGHRPKKAAA---APT-------TP 99
Query: 85 SRRAPTVS 62
SR AP+ S
Sbjct: 100 SRGAPSAS 107
>12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497
Length = 800
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -2
Query: 317 GTYPKIGPGSLETSYQITSSIFSVSWSLRSLRMHACILFP*HSSGP*WHVKVHFSFTL 144
G +P+I + ++ +I S L++L + CI + HSSG W H +++
Sbjct: 416 GEHPEISLNYSVAQF-MSRTITSTKGLLQNLVVGWCICYELHSSGTCWTAYQHMQYSI 472
>10_08_0643 +
19541991-19542188,19543261-19543515,19543598-19543722,
19543815-19543859,19544618-19544699,19545099-19545167,
19545276-19545446,19545530-19545595,19546236-19546273,
19547478-19547759,19548286-19548419,19548887-19548981,
19549083-19549127,19549250-19549309,19549483-19549584,
19549852-19549903,19549982-19550034,19550138-19550202,
19550579-19550630,19550780-19550857
Length = 688
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 258 HLLRILEPAVLEDACLHLISVAF 190
H L ++ P + E +CLHL+ +A+
Sbjct: 95 HSLWVVMPFMTEGSCLHLMKIAY 117
>04_04_0368 +
24741755-24741970,24742415-24742811,24742892-24743187,
24743860-24744096
Length = 381
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +1
Query: 133 STHDKVNEKWTFTCHHGPDECYGNKMQACILKDRRLQDTEKMELVI*YDVSSE-PGP--I 303
S+ K K + PDECY +K + ++K++ + + L + + +S++ P P I
Sbjct: 114 SSGGKGTVKQYYLTGKSPDECYPDKGRLTLVKNKAVAVSRSGRLYLAFQLSTDLPQPHLI 173
Query: 304 FGYVPNSSEP 333
+ P + P
Sbjct: 174 YAVGPEGNLP 183
>03_04_0153 +
17745473-17745889,17746120-17746272,17747307-17747512,
17747752-17747959
Length = 327
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +2
Query: 32 PSARTVRSSSRHSWRPSGGTSEDSSRLSWCLMERARMTR 148
P R + R WRP G + DS CL+ RAR R
Sbjct: 22 PQLRLCNWAPRPRWRPPGAGAADSC----CLLFRARARR 56
>03_01_0099 +
778521-778736,779521-779775,779831-779924,780064-780116,
780301-780339,781091-781159,781275-781445,781533-781598,
782533-782601,782993-783060,783308-783430,784095-784228,
784412-784506,784600-784644,784755-784814,785548-785599,
785674-785714,785857-785921,786704-786755,787021-787092
Length = 612
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 258 HLLRILEPAVLEDACLHLISVAF 190
H L ++ P + E +CLHL+ VA+
Sbjct: 101 HNLWVIMPFMSEGSCLHLMKVAY 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,927,432
Number of Sequences: 37544
Number of extensions: 246514
Number of successful extensions: 716
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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