Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_B21
(399 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 1e-12
SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10) 60 5e-10
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_1554| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_13245| Best HMM Match : Ion_trans (HMM E-Value=3.3e-25) 28 2.4
SB_55809| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_35671| Best HMM Match : zf-C3HC4 (HMM E-Value=0.01) 27 5.6
SB_29523| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38) 26 9.8
>SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 211
Score = 68.9 bits (161), Expect = 1e-12
Identities = 27/73 (36%), Positives = 41/73 (56%)
Frame = +1
Query: 7 VKIAVYYESLCPDSKKFITTQLAPVWRDFRGLVKVKLVPYGKSTHDKVNEKWTFTCHHGP 186
V I++YYES+C + I QL P ++ ++ + LVPYG + + KW F C HG
Sbjct: 27 VAISLYYESMCGGCRDMIRDQLYPTFQKVGSIMDITLVPYGNAQEYRYGNKWVFNCQHGQ 86
Query: 187 DECYGNKMQACIL 225
EC GN ++ C +
Sbjct: 87 GECEGNIIEVCAI 99
>SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)
Length = 311
Score = 60.5 bits (140), Expect = 5e-10
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = +1
Query: 1 QKVKIAVYYESLCPDSKKFITTQLAPVWRDFRGLVKVKLVPYGKSTHDKVNEKWTFTCHH 180
+KVK+AVYY S P+ ++F+ QL P ++ + +VP+G K + + C +
Sbjct: 26 EKVKLAVYYNSKNPEFRRFMVAQLYPTSNKIPNILDISMVPFGDGKEIKAKSGFQYYCTN 85
Query: 181 GPDECYGNKMQAC 219
G +EC N +QAC
Sbjct: 86 GAEECLENLIQAC 98
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 25 YESLCPDSKKFITTQLAPVWRDFRGLVKVKLVP 123
+ + PD+ + I +L P++ D+ ++KVKL P
Sbjct: 3409 FRVIAPDTIRDINDELVPLFDDYHKVMKVKLSP 3441
>SB_1554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 28.7 bits (61), Expect = 1.8
Identities = 20/82 (24%), Positives = 40/82 (48%)
Frame = -1
Query: 390 VSPLVLQTRIALSDQIRIGWFT*IRHVSKDWSGLA*DIISDNQFHLLRILEPAVLEDACL 211
+SP + + I D+I + W + H+ K S + + LR+L A ++ + +
Sbjct: 1 MSPDIGRLAICPQDKIGVSWNVHVDHIVKKAS---------KRLYALRVLRKAGVQQSDM 51
Query: 210 HLISVAFVRSVMARESPLFIHL 145
LI + +RSV+ +P++ L
Sbjct: 52 VLIYCSLIRSVLEYAAPVWASL 73
>SB_13245| Best HMM Match : Ion_trans (HMM E-Value=3.3e-25)
Length = 816
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 29 NPSARTVRSSSRHSWRPSGGT 91
NP AR +R SRH+W + GT
Sbjct: 429 NPLARRLREYSRHTWSQTKGT 449
>SB_55809| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +1
Query: 109 VKLVPYGKST-HDKVN--EKWTFTCHHGPDECYGNK 207
V+ + YGK+T HD N TCH D C+ NK
Sbjct: 108 VRNIHYGKTTCHDGKNTCHDDKVTCHDNKDTCHENK 143
>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 293 GSLETSYQITSSIFSVSWSLRSLRMHAC 210
G+L S+Q + IF V WS R ++ AC
Sbjct: 365 GNLVHSFQGSGGIFEVQWSPRGDKLAAC 392
>SB_35671| Best HMM Match : zf-C3HC4 (HMM E-Value=0.01)
Length = 527
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +2
Query: 260 NWLSDMMSQASPDQ--SLDTC 316
NWLS++M+ PDQ S DTC
Sbjct: 96 NWLSNVMNVDKPDQQISADTC 116
>SB_29523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 502
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 34 LCPDSKKFITTQLAPVWRDFRGLVKVKLVPYGKSTH 141
LCPD Q P W+ R + ++L+P S H
Sbjct: 351 LCPDILLLALLQTNPTWQLLRNELILELIPVFLSNH 386
>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
Length = 550
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 29 NPSARTVRSSSRHSWRP 79
NP T+ S+ R+SWRP
Sbjct: 75 NPLCSTIASTCRYSWRP 91
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,384,859
Number of Sequences: 59808
Number of extensions: 270165
Number of successful extensions: 713
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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