Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_B20
(464 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 29 0.46
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb... 27 1.9
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p... 26 3.3
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 26 3.3
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo... 26 3.3
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 25 4.3
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch... 25 5.7
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 25 5.7
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 5.7
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 7.5
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 7.5
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 24 9.9
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces... 24 9.9
SPBC215.04 |git11||heterotrimeric G protein gamma subunit Git11 ... 24 9.9
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi... 24 9.9
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 28.7 bits (61), Expect = 0.46
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 226 VSGHEDHIKAELFKNGPVEAAFTVYSDLLSYKNGVYK 336
+ HE +K E+ KNG VE A + +L+ Y+ +++
Sbjct: 10 ILSHEVLLKIEMSKNGIVEYANPAFFELIGYEGDLFQ 46
>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 281
Score = 26.6 bits (56), Expect = 1.9
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +1
Query: 136 ILKHQNAKRTVNLVNVPFKKDKRYGKHVYSVSGHEDH----IKAELFKNGPVEAAFTVYS 303
+L N K T++ + P K D+ + S+S +ED+ I +L K F YS
Sbjct: 29 VLSLDNMKSTLSGLFAPLKLDEEQAEDDESLSSYEDYASRQIDDDLKKQRKKGITFIDYS 88
Query: 304 DLLSY 318
L+++
Sbjct: 89 SLITF 93
>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 472
Score = 25.8 bits (54), Expect = 3.3
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 221 ILYRDMKTISKLNCLRMVLSKPLL--LYTRTYSLIRTVF 331
+L +M S NCL +L KP L +YT+ S +++ +
Sbjct: 322 LLLLNMNLTSAFNCLANLLDKPFLQAVYTQDTSSLKSFY 360
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 25.8 bits (54), Expect = 3.3
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 233 DMKTISKLNCLRMVLSKPLLLY-TRTYSLIRTVFTNIQRE 349
D+ T+ K +C+ +S P+LL + ++L +F N +RE
Sbjct: 647 DLSTVVKTSCIGDTMSLPVLLTGSAPWTLEYEIFRNNKRE 686
>SPAC27F1.08 |pdt1||Nramp family manganese ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 521
Score = 25.8 bits (54), Expect = 3.3
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = -3
Query: 420 YKPVFVIILYSPTYNFNSVPAESISLCMFVN-TVLIRE*VRVYSKSGFDRTILKQFSFDM 244
Y+P I +S TY+ V + +F N ++LI Y+ SG D + L +D+
Sbjct: 303 YRPTHETIKHSLTYSIVEVALSLFTFALFTNSSILIVAGAVFYNTSGADTSDLFSI-YDL 361
Query: 243 V--FMSRYRINMFTVSFVF 193
+ ++S +F V+ +F
Sbjct: 362 LKEYVSISCGRLFAVALLF 380
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 4.3
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +1
Query: 391 VENNNKYWLIANSWNS-DWGDN 453
+E ++WL+ SWN+ GDN
Sbjct: 510 IETKGRWWLVGASWNNVPSGDN 531
>SPAC14C4.08 |mug5||meiotically upregulated gene
Mug5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 179
Score = 25.0 bits (52), Expect = 5.7
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 176 LTSHSRKTNDTVNMFILYRDMKTISKLNCLRMVLSKPLLLYTRTYSLIRT 325
+ H K+ +N F L D+K + + N VL L LY R I T
Sbjct: 91 MIEHYEKSLSNINFFSLSNDLKRLEEYNTSCSVL---LSLYQRQLKKIST 137
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.0 bits (52), Expect = 5.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 102 HVPGNRMPCNGDTKTPKCQKN 164
HVPGN P K+P QK+
Sbjct: 80 HVPGNNSPLQTPQKSPPRQKH 100
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.0 bits (52), Expect = 5.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 105 RDVHTVEFRKVGNLGLSYNCHPIQAQRASNIPK 7
RD HT F G++Y H ++ + IPK
Sbjct: 886 RDDHTFSFDYKLKKGVNYQSHGLKVAEMAGIPK 918
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 24.6 bits (51), Expect = 7.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 54 NSSQGCRPYEIPPCEHHVPGNRMP 125
N + C P+ PP +HH P R P
Sbjct: 155 NHVRSCPPF--PPTQHHHPHTRPP 176
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 24.6 bits (51), Expect = 7.5
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = -3
Query: 390 SPTYNFNSVP---AESISLCMF-VNTVLIRE*VRVYSKSGFDRTILKQFSFDMVFMSRYR 223
SP+ +F+S +E S+ N VL + + K+ D I +Q+SFD++ R
Sbjct: 209 SPSKDFSSASQPNSEGFSILKLPYNKVLGKPIEELLVKTLHDNQIPEQYSFDLLVSLMLR 268
Query: 222 INMFTVS 202
N++ ++
Sbjct: 269 QNLYDIN 275
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 24.2 bits (50), Expect = 9.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 60 SQGCRPYEIPPCEHHV 107
++ CRP IPP E HV
Sbjct: 622 TKSCRPPPIPPRESHV 637
>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 24.2 bits (50), Expect = 9.9
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = +1
Query: 7 LGNIGSTLGLYRVAIITQAKVADLTKFHR--VNITYLETECPVTVILKHQNAKRTVNLVN 180
L + +G+ + ++ L+ F+ T ++ PVT ++ L+
Sbjct: 285 LHTVQEVVGMQAIKFFIVLILSSLSNFYLNIATFTQIKVTSPVTYMISVSARSILQTLLA 344
Query: 181 VPFKKDKRYGKHVYSV 228
V F + YG +Y V
Sbjct: 345 VAFLGETLYGNRIYGV 360
>SPBC215.04 |git11||heterotrimeric G protein gamma subunit Git11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 72
Score = 24.2 bits (50), Expect = 9.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 464 LKKPLSPQSEFHEFAISQYLLLFSTPQPIILIACPPRAFPSV 339
L + +S Q EFA Y + P+P+++ PP+A PSV
Sbjct: 7 LNEKISVQQARQEFA--NYAN--NIPEPMMVSVAPPKANPSV 44
>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 273
Score = 24.2 bits (50), Expect = 9.9
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -1
Query: 266 LNNSALIWSSCPDTE*TCLPYRLSFLNGTLTRFTVL 159
L+ A++ + P++E LP++LSF+ ++ VL
Sbjct: 163 LSLEAVLSMNYPNSEFAVLPFKLSFIRISIDAIAVL 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,761
Number of Sequences: 5004
Number of extensions: 46402
Number of successful extensions: 142
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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