Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B18
         (424 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   9e-09
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)                  42   3e-04
SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)           28   2.8  
SB_47204| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  

>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 56.4 bits (130), Expect = 9e-09
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = +2

Query: 14  MAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKR 127
           M K   ++KG+SAINEVVTREYT+NLHKR+HG+    R
Sbjct: 769 MVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYR 806



 Score = 53.2 bits (122), Expect = 9e-08
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
 Frame = +2

Query: 89   LHKRLHGVGFKKRAPRAIKEIRRFAEKQMGTPDVRVDTR---LNKYLWSKGVRNVPFXXX 259
            +H    G  F      + K +++  +K+  +    V TR   +N +    G+ NVP+   
Sbjct: 750  IHNAARGCNFFLLLDFSFKMVKKTDKKKGRSAINEVVTREYTINLHKRIHGM-NVPYRVR 808

Query: 260  XXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 382
                   N+DEDS HKL+TLVT V V++ KGLQT+ V++ +
Sbjct: 809  VRLARKRNEDEDSPHKLYTLVTSVAVSTFKGLQTQKVESEE 849


>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
          Length = 776

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 20/42 (47%), Positives = 25/42 (59%)
 Frame = +2

Query: 239 NVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTE 364
           NVP+          N+DEDS HKL+TLVT V V++ K L  E
Sbjct: 2   NVPYRVRVRLARKRNEDEDSPHKLYTLVTSVAVSTFKVLADE 43


>SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +2

Query: 2   STTTMAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEI 151
           ST   A    + K K  INEV+T  Y     + L      KR  R IKE+
Sbjct: 201 STLNFASRAKKIKNKPEINEVITPRYPPGEGEVLDDASIIKRYKRQIKEL 250


>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
          Length = 1078

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 100  TSRCWFQEACTPCYQGDPEIR*KT---NGYSRRKSRYPPKQIS 219
            TS    Q A  PC QG   I   T   +G+S +K  +PP+ IS
Sbjct: 906  TSSYATQGALNPCAQGSLSIGPHTGSSSGHSEQKGAHPPRSIS 948


>SB_47204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 105 TVLVSRSVHPVLSRRSGDSLKNKWVLQ 185
           + L S SVHPVL  R G   +N   LQ
Sbjct: 168 STLQSMSVHPVLCERQGSCTENTQYLQ 194


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 233  LLLTKDICLGGYLLLRLEYPFVFQRISG 150
            L LT  + LGG   LR EYP   +R +G
Sbjct: 1569 LQLTSPLMLGGLHSLRSEYPITSKRYTG 1596


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,123,758
Number of Sequences: 59808
Number of extensions: 284321
Number of successful extensions: 592
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)