BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I09A02NGRL0002_B18 (424 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B) ribo... 130 4e-31 At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C) 128 2e-30 At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A) 127 3e-30 At4g17250.1 68417.m02594 expressed protein 27 4.0 At1g27720.1 68414.m03388 transcription initiation factor IID (TF... 27 4.0 At2g01950.1 68415.m00130 leucine-rich repeat transmembrane prote... 27 6.9 At2g02020.1 68415.m00137 proton-dependent oligopeptide transport... 26 9.1 >At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B) ribosomal protein L31, Nicotiana glutinosa, U23784 Length = 119 Score = 130 bits (314), Expect = 4e-31 Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 2/116 (1%) Frame = +2 Query: 32 ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRRFAEKQMGTPDVRVDTRLN 211 E+KG+ EVVTREYT+NLH+RLH FKK+AP+AIKEIR+FAEK+MGT DVRVD +LN Sbjct: 3 EKKGRK--EEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLN 60 Query: 212 KYLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 373 K +WSKG+R P NDDED+ + F+LVT +P + GL T+ ++ Sbjct: 61 KQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIE 116 >At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C) Length = 119 Score = 128 bits (308), Expect = 2e-30 Identities = 61/116 (52%), Positives = 80/116 (68%), Gaps = 2/116 (1%) Frame = +2 Query: 32 ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRRFAEKQMGTPDVRVDTRLN 211 E+KG+ EV+TREYT+NLH+RLH FKK+AP+AIKEIR+FAEK MGT DVRVD +LN Sbjct: 3 EKKGRK--EEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 60 Query: 212 KYLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 373 K +WSKG+R P NDDED+ + F+LVT +P + GL T+ ++ Sbjct: 61 KQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIE 116 >At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A) Length = 119 Score = 127 bits (307), Expect = 3e-30 Identities = 61/117 (52%), Positives = 77/117 (65%), Gaps = 2/117 (1%) Frame = +2 Query: 38 KGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRRFAEKQMGTPDVRVDTRLNKY 217 KGK EVVTREYT+NLH+RLH FKK+AP AIKEIR+FA K MGT DVRVD +LNK Sbjct: 3 KGKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQ 62 Query: 218 LWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVDASQ 382 +WSKG+R P NDDED+ + F+LVT +P + GL T+ ++ + Sbjct: 63 IWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119 >At4g17250.1 68417.m02594 expressed protein Length = 416 Score = 27.5 bits (58), Expect = 4.0 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = +2 Query: 80 TVNLHKRLHGVGFKKRAPRAIKEIRRFAEKQMGTPDVRVD 199 TV KR + +KKR A+K+ + E++ G P ++ D Sbjct: 169 TVPATKRFLELKYKKRYEFALKQCPSYTERRRGVPKLKED 208 >At1g27720.1 68414.m03388 transcription initiation factor IID (TFIID) component TAF4 family protein contains Pfam profile PF05236: Transcription initiation factor TFIID component TAF4 family Length = 682 Score = 27.5 bits (58), Expect = 4.0 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Frame = +2 Query: 212 KYLWSKGVRNVPFXXXXXXXXXXNDD-EDSAHKLFTLVTYVPVASIKGLQTENVDAS 379 +YL +GV NVP NDD E + K+ + +S+ T +D+S Sbjct: 321 RYLVQQGVTNVPLKQKNAIPISSNDDLEKQSSKMGLFTSTTSASSVFPSMTTQLDSS 377 >At2g01950.1 68415.m00130 leucine-rich repeat transmembrane protein kinase, putative similar to brassinosteroid insensitive protein Length = 1143 Score = 26.6 bits (56), Expect = 6.9 Identities = 13/44 (29%), Positives = 24/44 (54%) Frame = -3 Query: 344 WRQRAHMLQG*TVCVLSLHHHCVCEIVLHEHGMEHS*LLLTKDI 213 W +R + +G + LHH+C+ I+ M+ S +LL +D+ Sbjct: 937 WEERKKIAKGAAKGLCFLHHNCIPHII--HRDMKSSNVLLDQDM 978 >At2g02020.1 68415.m00137 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family Length = 545 Score = 26.2 bits (55), Expect = 9.1 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -1 Query: 256 NTEWNIPDSF*PKIFV*AGIYSYVWSTHLFFSESPDLLDS 137 N W IP F + AG++ +V F+ +SPD + S Sbjct: 435 NIFWQIPQYF---LMGTAGVFFFVGRIEFFYEQSPDSMRS 471 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,032,274 Number of Sequences: 28952 Number of extensions: 178378 Number of successful extensions: 404 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 402 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 404 length of database: 12,070,560 effective HSP length: 74 effective length of database: 9,928,112 effective search space used: 655255392 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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