Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_B17
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 33 0.037
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 29 0.46
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom... 29 0.61
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 29 0.61
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 27 1.4
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 27 1.4
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 27 1.4
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 27 1.9
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 27 1.9
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 26 3.2
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 3.2
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 26 3.2
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 26 4.3
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 26 4.3
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 25 9.9
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 25 9.9
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 32.7 bits (71), Expect = 0.037
Identities = 21/81 (25%), Positives = 38/81 (46%)
Frame = +3
Query: 12 VSEKLGEMEEYFYRLFVSIREPNSNDYSDAESAAKAFSNLFAKIVDKSFKAVEIDNNEEI 191
+ + L E EE F F ++ P + + A AFSNLF + + ++ N E+
Sbjct: 306 IDKNLQEFEEKFQATF-PLKAPYDTEKAHQIFAHTAFSNLFGNVGFFTGDSIVSKNPIEL 364
Query: 192 NELVSQVVDGFQGTAAAAAKG 254
++ + + GF+ A A+G
Sbjct: 365 DDEDYEFMQGFESAAGKLAEG 385
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 29.1 bits (62), Expect = 0.46
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 195 ELVSQVVDGFQGTAAAAAKGKVDDESIEQTIAGWGEIISSLNKYAELSEEE 347
+L +DGF + +VDD+ I +TI W I L + A ++E+E
Sbjct: 76 KLYYNFMDGFN-KRTDTLQHRVDDKKILKTIEKWSCIKEKLRRVANITEQE 125
>SPBC776.07 |||mitochondrial Mam33 family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.7 bits (61), Expect = 0.61
Identities = 17/90 (18%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = +3
Query: 90 YSDAESAAKAFSNLFAKIVDKSFKAVEIDNNEEINEL----VSQVVDGFQGTAAAAAKGK 257
+S ++ N +K+++ ++ + N+ ++E+ V+ ++ QG+A K K
Sbjct: 44 FSSIRRSSHTAGNPRSKLINALSSEIDYEKNQVLSEISLPPVNYDIEDVQGSAVVVLKAK 103
Query: 258 VDDESIEQTIAGWGEIISSLNKYAELSEEE 347
DE+I T+ ++ ++ + + +E E
Sbjct: 104 HGDENIRITMNVSQDVTDAVPEEQDFTEFE 133
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 28.7 bits (61), Expect = 0.61
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -1
Query: 304 ISPHPAIVCSIDSSSTFPLAAAAAVP 227
I P P ++ ++ +SST P A++++VP
Sbjct: 470 IEPEPDVISTVRNSSTIPQASSSSVP 495
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 27.5 bits (58), Expect = 1.4
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +3
Query: 252 GKVDDESIEQTIAGWGEIISSLNKYAELSEEELSTPTNDAAVGFKEAANGAASRSLSGAV 431
GKV+ + I ++ I ++L KY+ LS E+L FK+AAN LS +
Sbjct: 162 GKVNKQRI--ALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFKQAANFIWPFQLSSPL 219
Query: 432 KGVR-KALSGFIRG 470
G R + FI G
Sbjct: 220 GGWRDRKFKHFIEG 233
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 27.5 bits (58), Expect = 1.4
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +3
Query: 252 GKVDDESIEQTIAGWGEIISSLNKYAELSEEELSTPTNDAAVGFKEAANGAASRSLSGAV 431
GKV+ + I ++ I ++L KY+ LS E+L FK+AAN LS +
Sbjct: 161 GKVNKQRIP--LSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFKQAANFLWPFKLSSPL 218
Query: 432 KGVR-KALSGFIRG 470
G R + FI G
Sbjct: 219 GGWRERKFKHFIEG 232
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.5 bits (58), Expect = 1.4
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +3
Query: 297 GEIISSLNKYAELSEEELSTPTNDAAVGFKEAANGAASRSLSGAVKGVRKALSGFIRGLQ 476
G+I SS+NK +++ D A + NG AS+ G + GV ++ + G+
Sbjct: 280 GKIRSSVNKGMTDVASQVNRGMTDVASQVNKGVNGVASQVNKG-MNGVANQVNKGVTGVA 338
Query: 477 SLADKLDVDISEEFNN 524
S K + ++F N
Sbjct: 339 SQVRKPVGKLEKKFEN 354
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 241 PLLKEKLTMNQSNKLSQDGEKLFLL*TNTQSSVRRNYLHQQTMLQSG 381
P K+K +N N + +K+ N+Q+S+ N L + +++SG
Sbjct: 44 PSEKQKQNLNLPNSYTNSSQKVRESTVNSQASLSSNDLRTELLIKSG 90
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/42 (23%), Positives = 25/42 (59%)
Frame = +3
Query: 255 KVDDESIEQTIAGWGEIISSLNKYAELSEEELSTPTNDAAVG 380
K+D+ + I GW + ++ +K+AE ++E++ + + +G
Sbjct: 488 KLDNSLTHEQIEGWRRMFTTDSKFAEAVKKEVTFGSGNTNIG 529
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 3.2
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = +3
Query: 315 LNKYAELSEEELST--PTNDAAVGFKE-AANGAASRSLSGAVKGVRKALSG-FIRGLQSL 482
+N Y + ++EL TN V F A G+ SRS A GVR L G F G+ L
Sbjct: 413 VNDYKVIPDQELIAMGATNLIGVFFHAYPATGSFSRSAINAKSGVRTPLGGIFTAGVVVL 472
Query: 483 A 485
A
Sbjct: 473 A 473
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 3.2
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = +3
Query: 144 VDKSFKAVEIDNNEEINELVSQVVDGFQGTAAAAAKGKVDDESIEQTIAGWGEIISSLNK 323
VDK+F + + + +E V Q V GF+ +A + + + E + G+ + ++ N
Sbjct: 301 VDKNFDRLLKNRKSKNDEAVKQKVGGFESNNSATTEVS-ERKDREASFQGFADTLAKPNT 359
Query: 324 YAELSEEELSTPTN 365
A+ L +N
Sbjct: 360 SAQQKMPSLGDNSN 373
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 3.2
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Frame = +3
Query: 147 DKSFKAVEIDNNEEINELVSQVVDGFQGTAAAAAKGKVDDESIEQTIAGWG--------E 302
++ +E D E+ + ++ +Q +A+ A G ++DE + G+G E
Sbjct: 296 EEELAQIEADRLRELEDQRISRMEHYQEDSASEA-GSIEDEQATDNVFGFGKGLEQENEE 354
Query: 303 IISSLNKYAELSEEELSTPTNDAAV 377
+ +N+ AE SE+E S ++ + V
Sbjct: 355 EWNGINEEAEESEDEESVNSDTSFV 379
>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 4.3
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 240 AAAKGKVDDESIEQTIAGWGEIISSLNKYAELSEEELSTPTNDAAVGFKEAANGAAS 410
++A K D E+ +GEI S+ N + L+ ND GF NG A+
Sbjct: 359 SSASQKYDIEAWMPARQSYGEITSASNCLEYQARRLLTRYRNDKDSGFVHTLNGTAA 415
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.8 bits (54), Expect = 4.3
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = +3
Query: 111 AKAFSNLFAKI-VDKSFKAVEIDNNEEINELVSQVVDGFQGTAAAAAKGKVDDESIEQTI 287
A+A+ + + I VD +E+D+ + I + ++ + AA +DESIE T
Sbjct: 361 AEAYCRIHSVISVDVLANKLEMDSAQLIQLVENRNNPSVAAASNVAADQSTEDESIEST- 419
Query: 288 AGWGEIISSLNKYAELSEEELSTPTNDAAVGFKEAANG 401
+ L AE + E P + GFK +G
Sbjct: 420 -STNVVADDLITEAE-TATEAEEPEPEVQFGFKAKLDG 455
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 24.6 bits (51), Expect = 9.9
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 33 MEEYFYRLFVSIREPNSNDYSDAESAAKAFSNLFA--KIVDKS 155
M E++ LF +PN+ND+ AA F KI D+S
Sbjct: 499 MAEFYVSLFPIGSKPNANDFFQGYLAAPIVIAFFIGYKIYDRS 541
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 24.6 bits (51), Expect = 9.9
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 90 YSDAESAAKAFSNLFAKIV-DKSFKAVEIDNNEEINELVSQVVDGFQGTAAAAA 248
+ +A S KA++ L+AKI D F + + + + +E ++++ + +Q A A
Sbjct: 59 FVEAVSVQKAYNKLYAKIANDYEFLRLHLQSITKYDEFMNKLWNLYQKHREAVA 112
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,664
Number of Sequences: 5004
Number of extensions: 38658
Number of successful extensions: 154
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -