Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B17
         (556 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.63 
SB_38768| Best HMM Match : HAMP (HMM E-Value=4.5e-14)                  30   1.1  
SB_35649| Best HMM Match : M (HMM E-Value=6e-09)                       30   1.1  
SB_7589| Best HMM Match : Ras (HMM E-Value=0)                          30   1.1  
SB_52594| Best HMM Match : ShTK (HMM E-Value=1e-06)                    30   1.5  
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)        29   1.9  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_30029| Best HMM Match : Extensin_2 (HMM E-Value=0.45)               29   3.4  
SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)                 29   3.4  
SB_22380| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_14315| Best HMM Match : ROF (HMM E-Value=7.4)                       28   5.9  
SB_56308| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_14306| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)                27   7.8  
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)               27   7.8  

>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 183  EEINELVSQVVDGFQGTAAAAAKGKVDDESIE-QTIAGWGEIISSLNKY--AELSEEELS 353
            EE+   V +V    +  AA+  + +V  E  E Q +   G++ ++   +  AE ++EE  
Sbjct: 1014 EEVEATVEEVEAPIEEAAASVEEAEVPIEKAETQPVDTEGQVENAETSFEEAEAADEETE 1073

Query: 354  TPTNDAAVGFKEA 392
             P  +A   F+EA
Sbjct: 1074 EPVKEAEASFEEA 1086


>SB_38768| Best HMM Match : HAMP (HMM E-Value=4.5e-14)
          Length = 235

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +3

Query: 60  VSIREPNSNDYSDAESAAKAFSNLFAKIVDKSFKAVEIDNNEEINELVSQVVDGFQGTAA 239
           +S+R   S    +    AKAF+ +  ++ +   K V+ +  E I +L SQV    Q   A
Sbjct: 171 LSLRAEISKHDDEINQLAKAFNKMIKELNEFQVKLVKTEKAESIAKLASQVAHDIQSPLA 230

Query: 240 A 242
           +
Sbjct: 231 S 231


>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
          Length = 1279

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +3

Query: 261  DDESIEQTIAGWGEIISSLNKYAELSEEELSTPTNDAAV---GFKEAAN 398
            +++S E+ + G  E++ SLN   +  EE+L    +D  V    FKEA N
Sbjct: 897  ENQSAEEKLQGQREVLDSLNAKVKELEEQLELKDSDLEVLRRDFKEAEN 945


>SB_7589| Best HMM Match : Ras (HMM E-Value=0)
          Length = 640

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/53 (41%), Positives = 28/53 (52%)
 Frame = +3

Query: 258 VDDESIEQTIAGWGEIISSLNKYAELSEEELSTPTNDAAVGFKEAANGAASRS 416
           VDDE + Q +A    + + L      SEEE  T  +D  VG +EAA GA S S
Sbjct: 377 VDDEELAQLVA----MATGLTD----SEEETETEDDDTTVGVREAAVGADSIS 421


>SB_52594| Best HMM Match : ShTK (HMM E-Value=1e-06)
          Length = 324

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 3/128 (2%)
 Frame = +3

Query: 60  VSIREPNSN--DYSDAESAAKAFSNLFAKIVDKSFKAVEIDNNEEINELVSQVVDGFQGT 233
           +   +P S+  D        KAF++  +   DK  KA+E D   +++ L  QV+     T
Sbjct: 11  IDTSDPTSSGKDQDIITEVEKAFNSSMSGKSDKVLKALESDIERKVDGLADQVI-----T 65

Query: 234 AAAAAKGKVDDESIEQTIAGWGEIIS-SLNKYAELSEEELSTPTNDAAVGFKEAANGAAS 410
              +A  K D     Q   G   +++ ++  +A+ S E + T + D  +   ++ N  + 
Sbjct: 66  PKDSASAKNDSAKDPQIDDGSENVVTQTVADFAD-SSEAVGTESADDVIVHVDSGNKKSM 124

Query: 411 RSLSGAVK 434
            S +  VK
Sbjct: 125 GSRNTGVK 132


>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
          Length = 1709

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/64 (25%), Positives = 36/64 (56%)
 Frame = +3

Query: 9    DVSEKLGEMEEYFYRLFVSIREPNSNDYSDAESAAKAFSNLFAKIVDKSFKAVEIDNNEE 188
            D+++K+G ++E       S++E NSN   + +  +  F+   A++ +K  +A+E +N + 
Sbjct: 1036 DLTKKIGSVQENEEGTLESVKESNSNILQEKKKQSDEFNFQVAELKEK-VQALEDENRKG 1094

Query: 189  INEL 200
             + L
Sbjct: 1095 ASSL 1098


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 9/58 (15%)
 Frame = +3

Query: 147  DKSFKAVEIDNNEEINE--LVSQVV-----DGFQGTAA--AAAKGKVDDESIEQTIAG 293
            D+  +AVE +  E++ +  + SQ V     D  QG  A  A A G  ++ESIE+ +AG
Sbjct: 2350 DQEMQAVEANQTEQMQDENIGSQAVGNIIPDSSQGITADIAEASGSENEESIERAVAG 2407


>SB_30029| Best HMM Match : Extensin_2 (HMM E-Value=0.45)
          Length = 622

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +3

Query: 177 NNEEINELVSQVVDGFQGTAAAAAKGKVDDESIEQTIAGWGEIISSLNKY 326
           NN  ++E  +  +   QGTA  + + K+ D+ ++       EI+  L +Y
Sbjct: 17  NNSSVSEETNTALKFAQGTANYSKRSKLSDDGLDSLTRRDQEILQELEEY 66


>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
          Length = 242

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = +3

Query: 183 EEINELVSQVVDGFQGTAAAAAKGKVDDESIE-QTIAGWGEIISSLNKY--AELSEEELS 353
           EE+   V +V    +  AA+  + +V  E  E Q +   G + ++   +  AE ++EE  
Sbjct: 47  EEVEATVEEVEAPMEEAAASVEEAEVPIEKAETQPVDTEGPVENAETSFEEAEAADEETE 106

Query: 354 TPTNDAAVGFKEA 392
            P  +A   F+EA
Sbjct: 107 EPVKEAEGSFEEA 119


>SB_22380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 267 ESIEQTIAGWGEIISSLNKYA 329
           E++EQ +  WG ++ S++K+A
Sbjct: 10  EAVEQILEAWGHLLDSIDKFA 30


>SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/53 (30%), Positives = 31/53 (58%)
 Frame = +3

Query: 126 NLFAKIVDKSFKAVEIDNNEEINELVSQVVDGFQGTAAAAAKGKVDDESIEQT 284
           N F KIV++      +D  ++I+EL+  +VD  +       +G+VD+E+ ++T
Sbjct: 154 NCFGKIVEE----YGLDRFQDISELLFPIVDPEKKEDEEQEEGEVDEENEDKT 202


>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 159 KAVEIDNNEEINELVSQVVDGFQGTAAAAAKGKVDDESIEQTI 287
           K +   + E+ +E +  V+DG Q +  A    K+D  S E TI
Sbjct: 194 KHLRFGHQEDAHEFLRYVIDGMQKSCLAGQPEKMDRYSKETTI 236


>SB_14315| Best HMM Match : ROF (HMM E-Value=7.4)
          Length = 239

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 267 ESIEQTIAGWGEIISSLNKYA 329
           E++EQ +  WG ++ S++K+A
Sbjct: 121 EAVEQILEAWGHLLDSIDKFA 141


>SB_56308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 417 LSGAVKGVRKALSGFIRGLQSLADKLD 497
           LSG  +G++K+L+  IRGL  L  +LD
Sbjct: 220 LSGETEGIKKSLAAAIRGL-GLVQRLD 245


>SB_14306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 216 DGFQGTAAAAAKGKVDDESIEQTIAGWGEIISSLNKYAELSEEELS-TPTN 365
           +G+ G   A  KG  +DE++   +  WGE  +  +   E    + S TP N
Sbjct: 424 EGYLGAIGAFLKGAEEDENLPLRLLTWGENYAGSSGLPEAPPTKRSATPEN 474


>SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)
          Length = 739

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/69 (20%), Positives = 29/69 (42%)
 Frame = +3

Query: 183 EEINELVSQVVDGFQGTAAAAAKGKVDDESIEQTIAGWGEIISSLNKYAELSEEELSTPT 362
           E +N  +  + D  +GT     K + + +S +  +    + I++LNK   +  ++     
Sbjct: 131 EGLNSQLKNISDELEGTKKRLKKAEYERDSAQSYVTNLKQEIATLNKELHVERQKRKEEL 190

Query: 363 NDAAVGFKE 389
               V  KE
Sbjct: 191 QSKIVSSKE 199


>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
          Length = 1737

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 387 EAANGAASRSLSGAVKGVRKALSGFIRGLQSLADKLDVDISEEFNNSPD 533
           E A G  +R     +K ++ + SG  RG +S  +  D D  + F +SP+
Sbjct: 366 EVARGRETRQT--VIKDIKSSKSGSKRGAKSEVNNFDTDEEDIFFDSPN 412


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,834,629
Number of Sequences: 59808
Number of extensions: 265497
Number of successful extensions: 907
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)