Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B17
         (556 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.7  
AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor pr...    22   4.8  
AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor pr...    22   4.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 301 KLFLL*TNTQSSVRRNYLHQQTMLQSGSKKQPTAQHLDHSAEP 429
           K FL+   T  S   N   Q TM +   +K+P +Q     AEP
Sbjct: 859 KPFLIPEQTSISHENN---QPTMNKCSDRKRPASQATSVKAEP 898


>AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 171 IDNNEEINELVSQVVDGFQGTAAAAAKGKVD 263
           +D   +IN LVS +V G   +A   A+  V+
Sbjct: 36  VDVVSQINSLVSSIVSGANVSAVLLAQTLVN 66


>AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 171 IDNNEEINELVSQVVDGFQGTAAAAAKGKVD 263
           +D   +IN LVS +V G   +A   A+  V+
Sbjct: 36  VDVVSQINSLVSSIVSGANVSAVLLAQTLVN 66


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 318 NKYAELSEEELSTPTNDAAVG 380
           N+Y + SEE+L   TN  + G
Sbjct: 347 NEYEQPSEEDLKRITNQPSEG 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,109
Number of Sequences: 438
Number of extensions: 2708
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)