Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_B17
         (556 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:...    34   0.073
At1g47480.1 68414.m05267 expressed protein similar to PrMC3 [Pin...    34   0.073
At1g71080.1 68414.m08203 expressed protein                             31   0.68 
At2g34610.1 68415.m04252 expressed protein                             30   1.2  
At4g21400.1 68417.m03091 protein kinase family protein contains ...    29   2.8  
At5g50640.1 68418.m06274 CBS domain-containing protein / octicos...    28   4.8  
At5g50530.1 68418.m06258 CBS domain-containing protein / octicos...    28   4.8  
At2g43310.1 68415.m05384 expressed protein                             28   4.8  
At5g63490.1 68418.m07970 CBS domain-containing protein / octicos...    27   6.4  
At5g13860.1 68418.m01620 tumour susceptibility gene 101 (TSG101)...    27   6.4  
At2g16400.1 68415.m01877 homeodomain-containing protein                27   6.4  
At5g53890.1 68418.m06703 leucine-rich repeat transmembrane prote...    27   8.4  
At4g37750.1 68417.m05344 ovule development protein aintegumenta ...    27   8.4  
At4g02030.1 68417.m00273 expressed protein                             27   8.4  

>At5g20490.1 68418.m02435 myosin, putative similar to myosin
            (GI:433663) [Arabidopsis thaliana]; myosin-like protein
            my5, common sunflower, PIR:T14279
          Length = 1545

 Score = 33.9 bits (74), Expect = 0.073
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
 Frame = +3

Query: 96   DAESAAKAFSNLFAKIVDKSFKAVEIDNNEEINELVSQVVDGFQGTAAAAAKGKVDDESI 275
            +A+  A  F       ++K +  +  +  +EI+ L+   +   + + A+  KG+    ++
Sbjct: 1265 EAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGRAQANAV 1324

Query: 276  EQT--IAGWGEIISSLNKYAELSEEELSTP 359
             Q   IA W  I  SLN Y  L +   + P
Sbjct: 1325 AQQALIAHWQSIRKSLNSYLNLMKANNAPP 1354


>At1g47480.1 68414.m05267 expressed protein similar to PrMC3 [Pinus
           radiata] GI:5487873
          Length = 314

 Score = 33.9 bits (74), Expect = 0.073
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = +3

Query: 63  SIREPNSNDYSDAESAAKAFSNLFAKIVDK-SFKAVEIDNNEEINELVSQVVDGFQGTAA 239
           +I EP  NDY+D +S      +  A I    +F+A + D   +I   +  +   F GT  
Sbjct: 137 AINEPWINDYADLDSLFLVGDSAGANISHHLAFRAKQSDQTLKIKG-IGMIHPYFWGTQP 195

Query: 240 AAAKGKVDDESIEQTIAGWGEIISSLNK 323
             A  ++ DE+ +Q + GW E +    K
Sbjct: 196 IGA--EIKDEARKQMVDGWWEFVCPSEK 221


>At1g71080.1 68414.m08203 expressed protein
          Length = 326

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = +3

Query: 261 DDESIEQTIAGWGEIISSLNKYAELSEEELSTPTNDAAVGFKEAANGA 404
           ++++ E+  A  GE + SLNK   ++EEE++   +D+    ++  N A
Sbjct: 210 ENDNAEKENADGGEYVESLNKQLSMTEEEIADVDDDSGGEGEKGLNAA 257


>At2g34610.1 68415.m04252 expressed protein
          Length = 290

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 249 KGKVDDESIEQTIAGWGEIISSLNKYAELSEEELSTPTND 368
           KGK  DE +E+    W  +     +++++S EEL+    D
Sbjct: 238 KGKKADEEMEEATKKWENVKEESEEFSKMSNEELNRRVED 277


>At4g21400.1 68417.m03091 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 711

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +3

Query: 177 NNEEINELVSQVVDGFQGTAAAAAKGKVDDESIEQTIAGWGEIISSLNKYAELSEEE 347
           N +E + L  +++D  +G AAA    +   +     +AG+ +   S +   +LSE++
Sbjct: 157 NRDEFDRLQIELLDRLKGIAAAGGPNRKYAQGSGSGVAGYPQFYGSAHCTPDLSEQD 213


>At5g50640.1 68418.m06274 CBS domain-containing protein /
           octicosapeptide/Phox/Bemp1 (PB1) domain-containing
           protein contains Pfam profiles: PF00571 CBS domain,
           PF00564: PB1 domain
          Length = 548

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
 Frame = +3

Query: 138 KIVDKSFKAVEIDNNEEINELVSQ---VVDGFQGTAAAAAKGKVDDESIEQTIAGWGEII 308
           K+V   F+ + +  N E+  L+     + D       +  KGK    ++E     WG  I
Sbjct: 152 KMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERSVEKGKAIAAAVEGVEKNWGTSI 211

Query: 309 SSLNKYAELSEEELSTPT 362
           +  N + E   E +  P+
Sbjct: 212 AGPNTFMETLRERIFKPS 229


>At5g50530.1 68418.m06258 CBS domain-containing protein /
           octicosapeptide/Phox/Bemp1 (PB1) domain-containing
           protein contains Pfam profiles: PF00571 CBS domain,
           PF00564: PB1 domain
          Length = 548

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
 Frame = +3

Query: 138 KIVDKSFKAVEIDNNEEINELVSQ---VVDGFQGTAAAAAKGKVDDESIEQTIAGWGEII 308
           K+V   F+ + +  N E+  L+     + D       +  KGK    ++E     WG  I
Sbjct: 152 KMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERSVEKGKAIAAAVEGVEKNWGTSI 211

Query: 309 SSLNKYAELSEEELSTPT 362
           +  N + E   E +  P+
Sbjct: 212 AGPNTFMETLRERIFKPS 229


>At2g43310.1 68415.m05384 expressed protein
          Length = 133

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 69  REPNSNDYSDAESAAKAFSNLFAKIVDKSFKAVEIDNNEEIN 194
           R P+SN + D+++A++    L  ++ +     V ID +EEI+
Sbjct: 52  RFPHSNHFWDSKTASRVGEKLGLRLRELGVDVVSIDADEEIS 93


>At5g63490.1 68418.m07970 CBS domain-containing protein /
           octicosapeptide/Phox/Bemp1 (PB1) domain-containing
           protein contains Pfam profiles: PF00571 CBS domain,
           PF00564: PB1 domain
          Length = 543

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
 Frame = +3

Query: 138 KIVDKSFKAVEIDNNEEINELVSQ---VVDGFQGTAAAAAKGKVDDESIEQTIAGWGEII 308
           K+V   F+ + +  N E+  L+     + D       AA KGK    ++E     WG   
Sbjct: 144 KMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKSWGTNT 203

Query: 309 SSLNKYAELSEEELSTPT 362
           S  N + E   + +  P+
Sbjct: 204 SVPNTFIETLRDRMFRPS 221


>At5g13860.1 68418.m01620 tumour susceptibility gene 101 (TSG101)
           family protein similar to SP|Q99816 Tumor susceptibility
           gene 101 protein {Homo sapiens}; contains Pfam profile
           PF05743: Tumour susceptibility gene 101 protein (TSG101)
          Length = 368

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 235 PPPLLKEKLTMNQSNKLSQDGEKLFLL*TNTQSSVRRNYLHQQTMLQSGSKKQPTAQHLD 414
           PPP   +++    S+ L+Q G        NT+S +R++ L+  +   S   K  T  H D
Sbjct: 3   PPPAKMQEIHQFLSSALTQRGPSALPYAENTKSLIRQHLLNLISSYTSLDPKTATFTHND 62


>At2g16400.1 68415.m01877 homeodomain-containing protein
          Length = 482

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 3/115 (2%)
 Frame = +3

Query: 165 VEIDNNEEINELVSQVVDGFQGTAAAAAKGKVDDESIEQTI---AGWGEIISSLNKYAEL 335
           +E       NE  +QVV GF  T   +   K   E +++T+       +     +K  E+
Sbjct: 92  IETSRGNNNNEYATQVVSGFTRTIHNSKYLKAAQELLDETVNVKKALKQFQPEGDKINEV 151

Query: 336 SEEELSTPTNDAAVGFKEAANGAASRSLSGAVKGVRKALSGFIRGLQSLADKLDV 500
            E+ L T T +     ++      S+ LS  +  V +    +   +Q +    DV
Sbjct: 152 KEKNLQTNTAEIPQAERQELQSKLSKLLS-ILDEVDRNYKQYYHQMQIVVSSFDV 205


>At5g53890.1 68418.m06703 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 1036

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 54  LFVSIREPNSNDYSDAESAAKAFSNLFAKIVDKSFKAVEIDNN 182
           LF+S+   +  D+S+  +  +   NL   I+ K+F   EI NN
Sbjct: 379 LFLSLSNNSFVDFSETMNVLQHCRNLSTLILSKNFIGEEIPNN 421


>At4g37750.1 68417.m05344 ovule development protein aintegumenta
           (ANT) identical to ovule development protein
           aintegumenta (ANT) (GI:1244708) ) [Arabidopsis thaliana]
          Length = 555

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 177 NNEEINELVSQVVDGFQGTAAAAAKGKVDDESIEQTIAGWGEII 308
           N+++I+E + +   GF+ T  AAAK K   E +   + G  +I+
Sbjct: 228 NHQQISEALVETSVGFETTTMAAAKKKRGQEDV--VVVGQKQIV 269


>At4g02030.1 68417.m00273 expressed protein
          Length = 694

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 319 TNTQSSVRRNYLHQQTMLQSGSKKQPTAQHLDHSAEPLKEYVK 447
           +NT +S R N LH   M +S S++  +     H A+  K+ V+
Sbjct: 543 SNTTTSSRSNTLHNDKMARSNSQRARSQLFETHLAKLFKQKVE 585


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,626,415
Number of Sequences: 28952
Number of extensions: 197153
Number of successful extensions: 645
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)