Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_B16
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 25 4.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 6.3
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 6.3
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 6.3
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 6.3
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 6.3
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 6.3
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 6.3
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 6.3
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 25 6.3
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 6.3
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 6.3
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 6.3
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 8.4
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 25 8.4
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Frame = +3
Query: 174 FFSHPSNGP----SGNYEPISTGPAFVDF 248
F + P+N P SG+Y PI P F F
Sbjct: 1560 FVTPPTNSPYAEVSGDYNPIHVSPTFAAF 1588
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 230 TGVRRFLSSQLSTRAIRLPSRPW 298
TG + + ++ + RA +LP+RPW
Sbjct: 272 TGAQANIITEETVRAHKLPTRPW 294
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 230 TGVRRFLSSQLSTRAIRLPSRPW 298
TG + + ++ + RA +LP+RPW
Sbjct: 272 TGAQANIITEETVRAHKLPTRPW 294
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 230 TGVRRFLSSQLSTRAIRLPSRPW 298
TG + + ++ + RA +LP+RPW
Sbjct: 272 TGAQANIITEETVRAHKLPTRPW 294
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 230 TGVRRFLSSQLSTRAIRLPSRPW 298
TG + + ++ + RA +LP+RPW
Sbjct: 272 TGAQANIITEETVRAHKLPTRPW 294
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 230 TGVRRFLSSQLSTRAIRLPSRPW 298
TG + + ++ + RA +LP+RPW
Sbjct: 272 TGAQANIITEETVRAHKLPTRPW 294
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 230 TGVRRFLSSQLSTRAIRLPSRPW 298
TG + + ++ + RA +LP+RPW
Sbjct: 272 TGAQANIITEETVRAHKLPTRPW 294
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 230 TGVRRFLSSQLSTRAIRLPSRPW 298
TG + + ++ + RA +LP+RPW
Sbjct: 272 TGAQANIITEETVRAHKLPTRPW 294
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 230 TGVRRFLSSQLSTRAIRLPSRPW 298
TG + + ++ + RA +LP+RPW
Sbjct: 272 TGAQANIITEETVRAHKLPTRPW 294
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +3
Query: 243 DFYHPNYPPERYD--YPLARG 299
+ +HP++PPE D PL RG
Sbjct: 298 EMFHPDHPPENTDEMEPLPRG 318
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 230 TGVRRFLSSQLSTRAIRLPSRPW 298
TG + + ++ + RA +LP+RPW
Sbjct: 272 TGTQANIITEETVRAHKLPTRPW 294
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 230 TGVRRFLSSQLSTRAIRLPSRPW 298
TG + + ++ + RA +LP+RPW
Sbjct: 272 TGAQANIITEETVRAHKLPTRPW 294
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 230 TGVRRFLSSQLSTRAIRLPSRPW 298
TG + + ++ + RA +LP+RPW
Sbjct: 272 TGAQANIITEETVRAHKLPTRPW 294
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 8.4
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 30 VLAMAVVNRVH-VVDHNPDYNPGQVHVVDNSGVPSDGN 140
V A A VN VV NPD N + ++ NSG +GN
Sbjct: 571 VCAYADVNHAKPVVIVNPDENGLRTYLTKNSGSSFNGN 608
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 469 YVTEKKILFELC*LLQKQNKKYEYKCITKL 380
Y+T+K + + LLQKQ +YE + +L
Sbjct: 427 YITQKTMSYRQSALLQKQRIEYEAAVLCEL 456
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,290
Number of Sequences: 5004
Number of extensions: 41169
Number of successful extensions: 111
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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