Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_B16
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 30 0.90
12_02_0216 + 15804110-15804284,15804341-15804351 29 1.6
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 29 2.7
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178... 28 3.6
03_02_0259 - 6920472-6920579,6920744-6921022,6921115-6921390,692... 28 3.6
02_01_0485 + 3487578-3487635,3488281-3488399,3488600-3488698,348... 28 3.6
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 28 4.8
07_03_0808 - 21668100-21669092 27 6.3
07_03_0380 + 17460078-17460782,17461194-17461252,17461388-174614... 27 6.3
12_02_1095 - 26036283-26036481,26036582-26036772,26037069-260381... 27 8.4
11_01_0532 + 4201374-4201401,4201475-4202652,4204316-4204670,420... 27 8.4
06_03_1122 - 27775141-27775333,27775414-27775604,27775907-277770... 27 8.4
04_03_0742 + 19200045-19200053,19200158-19200437,19201331-192015... 27 8.4
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 27 8.4
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 30.3 bits (65), Expect = 0.90
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 57 VHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVLANPDPFFSHPSNG 197
V+ V + +PG +++N+G S GN ++ N PFF SNG
Sbjct: 41 VYDVTSYVEEHPGGDEILNNAGATSKGNYALILPVNEFPFFLVYSNG 87
>12_02_0216 + 15804110-15804284,15804341-15804351
Length = 61
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 117 SGVPSDGNSDHVVLANPDPFFSHPSNGPSGNYEPISTGPAF 239
SG P+ +H V FF+ SN SGNY + G F
Sbjct: 12 SGSPAPPYKNHTVAGADGWFFNATSNTTSGNYSDWAAGETF 52
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 105 VVDNSGVPSDGNSDHVVLANPDPFFSHP 188
V++N +P N HVVLANP P +P
Sbjct: 248 VLENCQLPH-ANHGHVVLANPSPILFYP 274
>03_05_0226 -
22115285-22115404,22115477-22116661,22117037-22117861,
22118029-22118106,22118370-22118420,22118510-22118581,
22118666-22118667,22119453-22119557,22119668-22119749,
22120178-22120227,22120514-22120567,22121084-22121164,
22121567-22121656,22121884-22121964,22122304-22122544
Length = 1038
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -3
Query: 179 EERIRVRKNNVVTIAVRWYTTIVHHVNLAWIIIRVMIDHVHSV 51
E + R NN + ++ NL W IIRV +DH H +
Sbjct: 461 ETVVAERNNNEIKATSCNCALVISKRNLIWRIIRVNLDHNHKM 503
>03_02_0259 -
6920472-6920579,6920744-6921022,6921115-6921390,
6921473-6921691,6921795-6921963,6922248-6922422,
6922490-6922601,6923343-6923573
Length = 522
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 105 VVDNSGVPSDGNSDHVVLANPDPFFSHP 188
V++N +P N HV+LANP P +P
Sbjct: 240 VLENCQLPHP-NHGHVILANPSPILCYP 266
>02_01_0485 +
3487578-3487635,3488281-3488399,3488600-3488698,
3488795-3488851,3488954-3489109,3489227-3489311,
3489489-3489579,3489693-3489857,3489923-3490045,
3490244-3490319,3490486-3490633,3490769-3491934,
3492041-3492231,3492321-3492513
Length = 908
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 222 STGPAFVDFYHPNYPPERYDYPLARGGKYMSHT 320
ST F FY+P P + PLA+ K + HT
Sbjct: 265 STNSRFTIFYNPRASPSEFVIPLAKYVKAVYHT 297
>03_06_0327 -
33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 27.9 bits (59), Expect = 4.8
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +3
Query: 72 HNPDYNPGQVHVVDNSGVPSDG---NSDHVVLANPDPFFSHPSNGPSGNYEPISTGPA 236
H Y PG V+ + GVP G S V + P P SH S+ P+ Y+P + PA
Sbjct: 83 HQGAYQPGGVYRAPSPGVPVIGGYARSTPVTIRAPPP--SH-SSAPA-PYQPAAAAPA 136
>07_03_0808 - 21668100-21669092
Length = 330
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 231 VQCLWVHNFR*DRLMDERRKDPGSQEQRGHYCRPMVHHYCPPREP 97
V L++H++ RL R+ + RGH +P + H P P
Sbjct: 119 VSGLFLHHYPAPRLQPRARRPRRPRRARGHQHQPALRHLPPSTAP 163
>07_03_0380 +
17460078-17460782,17461194-17461252,17461388-17461492,
17461732-17461867,17461919-17461939
Length = 341
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 60 HVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVLA 161
H+V+ P + G+ V + VP DG +H+VL+
Sbjct: 282 HIVERKP-FRCGRYPPVVRTAVPVDGRFEHIVLS 314
>12_02_1095 -
26036283-26036481,26036582-26036772,26037069-26038198,
26038275-26038431,26038595-26038670,26038744-26038866,
26038950-26039114,26039208-26039298,26039622-26039706,
26039793-26039948,26040045-26040101,26040179-26040277,
26040523-26040635,26041022-26041079
Length = 899
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 222 STGPAFVDFYHPNYPPERYDYPLARGGKYMSHT 320
+T F FY+P P + PLA+ K + HT
Sbjct: 263 ATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHT 295
>11_01_0532 +
4201374-4201401,4201475-4202652,4204316-4204670,
4204791-4204864,4206965-4207056,4207500-4207573,
4207680-4207822,4207889-4207909
Length = 654
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 69 DHNPDYNPGQVHVVDNSGVPSDGNSDHVVLANPDPFFSHPSNGPSGNYEPISTGP 233
DH+ D + V+ D+S VP D + D + DP + EP+S P
Sbjct: 40 DHSDDSDSAAVNEDDDSAVPEDAD-DETLAGAEDPVLDLREAEVLPSAEPVSAFP 93
>06_03_1122 -
27775141-27775333,27775414-27775604,27775907-27777099,
27777206-27777353,27777534-27777609,27777696-27777818,
27777886-27778050,27778169-27778259,27778580-27778664,
27778745-27778900,27778992-27779048,27779138-27779236,
27779381-27779499,27780145-27780202
Length = 917
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 222 STGPAFVDFYHPNYPPERYDYPLARGGKYMSHT 320
ST F FY+P P + PL++ K + HT
Sbjct: 265 STNSRFTIFYNPRASPSEFVIPLSKYVKAVYHT 297
>04_03_0742 +
19200045-19200053,19200158-19200437,19201331-19201545,
19201705-19201792,19202277-19202842
Length = 385
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/53 (26%), Positives = 20/53 (37%)
Frame = +3
Query: 111 DNSGVPSDGNSDHVVLANPDPFFSHPSNGPSGNYEPISTGPAFVDFYHPNYPP 269
D D D +A + + +P Y P G A+ Y P+YPP
Sbjct: 301 DGEEKDKDKEKDPAAIAAANLYLHYPRFAFPAGYYPPGPGYAYPPPYPPSYPP 353
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +3
Query: 117 SGVPSD-GNSDHVVLANPDPFF-SHPSNGPSGNYEPIST 227
SG PS GN+ + ++P PF S PS+G SGNY + T
Sbjct: 464 SGSPSHRGNAG--MKSSPSPFAPSGPSSGGSGNYGRLPT 500
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,467,689
Number of Sequences: 37544
Number of extensions: 276249
Number of successful extensions: 771
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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